C21904

Overview
NameC21904
Unique NameC21904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length242
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21904 vs. ExPASy Swiss-Prot
Match: KCS12_ARATH (3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   90 KIWKWVDEKRDKECYILDYQCYKPTDDRXVSTDFXGQVIKRTKNLGLNXYK 242
            KIWK +D K+DK+CYILDYQC+KPTDDR VST F G++I R +NLGL  YK
Sbjct:   18 KIWKLIDSKQDKDCYILDYQCHKPTDDRMVSTQFSGEIIYRNQNLGLTEYK 68
[Close]
BLAST of C21904 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.902e-14
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:   90 KIWKWVDEKRDKECYILDYQCYKPTDDRXVSTDFXGQVIKRTKNLGLNXYK 242
            KIWK +D KRD+ CYILDYQC+KP+DDR V+T F G +I R K+L LN YK
Sbjct:   61 KIWKRIDSKRDQNCYILDYQCHKPSDDRMVNTQFSGDIILRNKHLRLNEYK 111
The following BLAST results are available for this feature:
BLAST of C21904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KCS12_ARATH3.467e-1668.633-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana... [more]
KCS3_ARATH1.902e-1464.713-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC21904 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSH-3R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21904 ID=C21904; Name=C21904; organism=Citrus sinensis; type=EST; length=242bp
GGCACGAGAACCAGTCTCTTTATTTTTNNTGCTCTCTCATGGGGCTTCTT
TTTTATCTCTACCTTCTCCCTTCTTTGTACCTCATGTTCAAGATATGGAA
GTGGGTTGATGAGAAAAGAGACAAAGAATGTTACATACTAGACTACCAAT
GCTACAAACCGACCGATGATAGANTGGTGAGCACTGATTTCNCTGGTCAA
GTCATAAAGAGGACAAAGAATCTTGGCCTCAACGNGTACAAA
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