C21906

Overview
NameC21906
Unique NameC21906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length219
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21906 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.753e-12
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   10 KALQELXPNANKTDKASMLDEIIDYXKFLQLQVKVLSMXR 129
            KALQEL PN NKTDKASMLDEIIDY KFLQLQVKVLSM R
Sbjct:  165 KALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 204
[Close]
BLAST of C21906 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.906e-12
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   10 KALQELXPNANKTDKASMLDEIIDYXKFLQLQVKVLSMXR 129
            K+LQEL PN NKTDKASMLDEIIDY KFLQLQVKVLSM R
Sbjct:  157 KSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSR 196
[Close]
BLAST of C21906 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.532e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   10 KALQELXPNANKTDKASMLDEIIDYXKFLQLQVKVLSMXR 129
            K+LQEL PN NKTDKASMLDEII+Y +FLQLQVKVLSM R
Sbjct:  126 KSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVLSMSR 165
The following BLAST results are available for this feature:
BLAST of C21906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BH066_ARATH1.753e-1290.00Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH069_ARATH3.906e-1287.50Transcription factor bHLH69 OS=Arabidopsis thalian... [more]
BH082_ARATH2.532e-1182.50Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionC21906 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSH-16R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21906 ID=C21906; Name=C21906; organism=Citrus sinensis; type=EST; length=219bp
GGCACGAGGAAAGCTCTTCAAGAACTTNTACCTAATGCCAACAAGACAGA
TAAGGCTTCGATGCTGGATGAGATCATTGACTATNTCAAATTCCTCCAGC
TGCAAGTAAAGGTCCTGAGCATGANTAGATTGGGCGGTGCTGCTGCTGTC
GCACCCCTTGTTGCTGATATGTCCTCANAGGGAGGAGGAGGTGGTGATTG
TNTCCAAGCAAACGGGCGG
back to top