CB250257

Overview
NameCB250257
Unique NameCB250257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.684e-94
Identity = 160/210 (76.19%), Postives = 185/210 (88.10%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGSASGFILPNSCL 631
            QGV+VS +G+SPNTDGIHVQ SSGVTIL+SKI TGDDCVS+GPG +NLWIE VACGPGHGISIGSLGKEQ+EAGVQNVTV +VTF+GTQNG+RIKSWGR S+GFARNILFQHA M NV+NPI+IDQ+YCPDN+ CPGQ SGV+ISDV Y+DIHGTSATEV VK DCS ++PC  I LEDVKL+Y NQ AE+SC++ADG+  G + P SCL
Sbjct:  184 QGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.829e-72
Identity = 130/210 (61.90%), Postives = 165/210 (78.57%), Query Frame = 2
Query:    5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGSASGFILPNSCLK 634
            GVKVSA  +SPNTDGIHV++S  V I +S+IGTGDDC+S+GPG+TN++I+ + CGPGHGISIGSLG+ ++E GV NVTV++V F GT NGVRIK+WG+ S+ FARNI+FQH  M  V NPIIIDQ+YC  ++ CP Q SGVK+S+V Y+DIHGTS TEV V LDCS   PCTGI ++DV L   ++PA+ASC NA+GSA+  +    CLK
Sbjct:  191 GVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCL-HKPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGSANDVVPFTPCLK 399          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.950e-52
Identity = 104/209 (49.76%), Postives = 135/209 (64.59%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQ--PAEASCANADGSASGFILPNSC 628
            + + A  +S NTDGIH+  S+GV ++ +KI TGDDCVS+G G  NL +ENV CGPGHGISIGSLG+   E  V+ VTV       T NGVRIK+W  +  G A NILF+   M+NV  P++IDQ YCP      G  S VK+SDV  + I GTSAT+V VKL CS   PCT I+L D+ L +N +  PA ++C+N     SG ++P +C
Sbjct:  228 IGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAAC 436          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.856e-51
Identity = 100/204 (49.02%), Postives = 134/204 (65.69%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQP--AEASCANADGSASGFILP 619
            V++  DSPNTDGIHV  +  + I DS + TGDDC+S+  G+ N+    + CGPGHGISIGSLG++  EA V NV V   T  GT NGVRIK+W +   G A+NI+FQ  +M NV NPIII+Q+YC   E CP Q S V++S+V+Y++I GTS+  + VK  CS   PC GIS+++VKL    Q   ++ASC+N      G + P
Sbjct:  234 VTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTW-QGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKASCSNVKLDTRGNVSP 436          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.578e-51
Identity = 101/209 (48.33%), Postives = 138/209 (66.03%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQA-SGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQ--PAEASCANADGSASGFILP 619
            Q V V+A G S NTDGIHV  S GVTI ++KI TGDDC+S+GPG+ N+ I  V CGPGHGISIGSLG+   E  V+ +TV   TF+GT NGVR+K+W  +  G A ++ FQ   MNNV NP+I+DQ YCP  + C  QA S +K+S++ + +I GTS  +V V + CS   PC+ + + ++ LSY     PA ++C+N   + SG  +P
Sbjct:  165 QHVTVTAPGTSINTDGIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQ-CSRQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSNVKPTFSGKQVP 372          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.265e-50
Identity = 99/204 (48.53%), Postives = 138/204 (67.65%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQPAEASCANADGSASGFILP 619
            V+++A GDSPNTDGIH+  +  + + +S IGTGDDC+S+  G  NL I ++ CGPGHGISIGSLG +  +A V  + V    F+ + NGVRIK++ +  SG A+NI FQ+  M NV NPIIIDQ+YC D + C  Q S V++ +V+Y++I GTSAT+V + L+CS + PC GI LE+VK+    +   ASC NA+    G + P
Sbjct:  231 VEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTY-QGGSGTAKNIKFQNIRMENVKNPIIIDQDYC-DKDKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKI----KGGTASCKNANVKNQGTVSP 428          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 97/208 (46.63%), Postives = 135/208 (64.90%), Query Frame = 2
Query:   11 KVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNNQ--PAEASCANADGSASGFILPNSC 628
            K+SAA  S NTDGIH+  S GV I++++I TGDDC+S+G G+ N+ I N+ CGPGHGIS+GSLG+ + E  V  + V + T TG+QNGVRIK+W ++  G A  + FQ   MN+V  PI+IDQ YCP N+      S VK+S + +++I GTS T+  VKL CS   PC G+ L D+ L+Y+ +  PA + C N   +  G  +P  C
Sbjct:  147 KISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAIC 354          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.569e-50
Identity = 100/204 (49.02%), Postives = 132/204 (64.71%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSY-NNQPAEASCANADGSASGFILPN 622
            V+A  +SPNTDGIHV  +  + I    IGTGDDC+S+  G+  + + ++ CGPGHGISIGSLG    EA V +V V      GT NGVRIK+W +  SG A NI FQ+  M+NV+NPIIIDQNYC  ++ C  Q+S V++ +V+YQ+I GT A+ V +  DCS R PC GI LEDV L       A+A C N + S +G + P+
Sbjct:  252 VTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTW-QGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVELSETGVVSPH 454          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.610e-49
Identity = 97/204 (47.55%), Postives = 134/204 (65.69%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKL-SYNNQPAEASCANADGSASGFILPN 622
            ++A+  SPNTDG+HV  +  + I D+ IGTGDDC+S+  G+ N+   N+ CGPGHGISIGSLG    EA V NVTV      G +NGVRIK+W +  SG A NI F +  M +V  PIIIDQNYC   E C  Q S V++ +V+Y++I GTSAT+V +K DCS+  PC GI +E++ L   + +P+EA+C N   + +  + P+
Sbjct:  239 INASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTW-QGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATCKNVHFNNAEHVTPH 441          
BLAST of CB250257 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.610e-49
Identity = 93/208 (44.71%), Postives = 129/208 (62.02%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPIIIDQNYCPDNENCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSRNPCTGISLEDVKLSYNN-QPAEASCANADGSASGFILPNSC 628
            +K+ A  +SPNTDGIH+  S GV I+ S I TGDDC+S+G G  N+ I+ + CGPGHGISIGSLGK Q E  V+ + +++ T T T NG RIK+W     G    I F+   MNNV +PI+IDQ YCP N+    + S VK+S++ +++I GTSA    +K  CS  +PC  + L D+ + +N  +PA + C N     SG + P  C
Sbjct:  188 LKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPATSQCLNVKPITSGKLNPIPC 395          
The following BLAST results are available for this feature:
BLAST of CB250257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PGLR_PRUPE3.684e-9476.19Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR6_ARATH8.829e-7261.90Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
PGLR2_ARATH5.950e-5249.76Exopolygalacturonase clone GBGA483 OS=Arabidopsis ... [more]
QRT2_ARATH3.856e-5149.02Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]
PGLR2_PLAAC6.578e-5148.33Exopolygalacturonase (Fragment) OS=Platanus acerif... [more]
ADPG1_ARATH3.265e-5048.53Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR_OENOR5.569e-5046.63Exopolygalacturonase (Fragment) OS=Oenothera organ... [more]
PGLR_ACTDE5.569e-5049.02Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
PGLR_SOLLC3.610e-4947.55Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
PGLR_GOSHI3.610e-4944.71Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionEST0023 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ026 similar to polygalacturonase (acc# BAC22689), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250257 ID=CB250257; Name=CB250257; organism=Citrus sinensis; type=EST; length=715bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTAG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGAAC
AAGCAGTGGATTTGCCAGGAACATTCTTTTCCAACATGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACGAG
AATTGTCCTGGACAGGCTTCGGGGGTTAAAATCAGTGATGTGATATATCA
AGATATTCATGGAACATCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCAAGGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCAGT
TACAATAATCAACCAGCTGAAGCTTCCTGTGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGACTTGGAG
TTGTGAAAAGTATTTGAGTAGGAAAAAAAGGCATAGGAAGCCGATCATGA
TTATATAGTTAGTAG
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