CB250270

Overview
NameCB250270
Unique NameCB250270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8722 contig Csv1_Contig8722:701..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGH_ARATH (Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.703e-37
Identity = 70/104 (67.31%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 TDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGPKAIPHTEDAIRVTQQAANFFISEARKSSNRPPARK 312
            TDCLVMQNH +GISP+  + N  L+ FFKI+TT +D+  KVYVSTVQ+  YPVT FQWHPEKNAFEWG   IPH+EDAI+VTQ AAN  +SEARKS NRP ++K
Sbjct:  210 TDCLVMQNHRFGISPQSFEGNIALSNFFKIVTTCVDDNGKVYVSTVQSTKYPVTGFQWHPEKNAFEWGSSKIPHSEDAIQVTQHAANHLVSEARKSLNRPESKK 313          
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGH_SOYBN (Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.436e-30
Identity = 64/105 (60.95%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 TDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGPK-AIPHTEDAIRVTQQAANFFISEARKSSNRPPARK 312
            TDCLV+ NH Y ISP ++Q N +L+ FF+IL TS D   K +VST +   YPVT   W PEKNAFEW      PHTEDAIRVTQ  ANFFISEARKS+N P A+K
Sbjct:  210 TDCLVLHNHRYAISPRKLQYNTKLSDFFEILATSGDRDGKTFVSTARGRKYPVTVNLWQPEKNAFEWATSLKAPHTEDAIRVTQSTANFFISEARKSTNTPDAQK 314          
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGHA_DICDI (Gamma-glutamyl hydrolase A OS=Dictyostelium discoideum GN=gghA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.151e-18
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   10 LVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFE-WGPKAIPHTEDAIRVTQQAANFFISEARKS 288
            + M NH +G+SP+  Q    +  FF +L+T++D     ++ST++A NYP+   QWHPEK  FE W  + + H+ D+I   Q  +NFF++E RKS
Sbjct:  187 ITMNNHQFGLSPQTYQQTSSINTFFDVLSTNVDRDGNTFISTIEAKNYPIYGTQWHPEKPIFEWWDQEVMNHSFDSIMANQYTSNFFVNECRKS 280          
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGHB_DICDI (Gamma-glutamyl hydrolase B OS=Dictyostelium discoideum GN=gghB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.395e-17
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    4 DCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGPK-AIPHTEDAIRVTQQAANFFISEARKSSNR 297
            D + M NHH+GISP     N  L +FF +L T+ D+    ++S +++ +YP+ A  WHPEK+ + W  K A  H+ +AI   Q  +NFF++E RKS+++
Sbjct:  183 DPITMNNHHFGISPNTFDNNSLLNQFFNVLATNNDKSGNEFISLIESKDYPIYAIIWHPEKSPYSWYSKDATDHSFNAILACQYMSNFFVNETRKSNHK 281          
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGH_BOVIN (Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.460e-15
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   25 HHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGP-KAIPHTEDAIRVTQQAANFFISEARKSSN 294
            H + +S      N++L  FF ILTT+ D  N  ++ST++ Y YP+   QWHPEK  +EWG  + I H  +A++     A FF++EARKS++
Sbjct:  195 HKWSLSVMNFTKNEKLKAFFSILTTNTDG-NIDFISTMEGYRYPIYGVQWHPEKAPYEWGQLRGISHAPNAVKAAFYLAEFFVAEARKSNH 284          
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGH_MOUSE (Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.885e-14
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    4 DCLVMQN-----HHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEW-GPKAIPHTEDAIRVTQQAANFFISEARKSSN 294
            D L ++N     H + +S +    N++L KFF ILTT+ D   + ++S+++ + YPV A QWHPEK  FEW     I H  +A++ +   A F +SEARK+S+
Sbjct:  182 DSLALENLTANFHKWSLSVKNFTENEKLKKFFNILTTNTDGKTE-FISSMEGFKYPVYAVQWHPEKAPFEWKNLGGISHAPNAVKTSFYLAEFLVSEARKNSH 283          
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGH_RAT (Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=Ggh PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.162e-14
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   25 HHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGP-KAIPHTEDAIRVTQQAANFFISEARKSSN 294
            H + +S +    N++L KFF ILT + D   + ++S+++ Y YP+ A QWHPEK  FEW   + I H  +A++ +   A FFISEA K+ +
Sbjct:  194 HKWSLSVKNFTENEKLKKFFNILTVNTDGKTE-FISSMEGYKYPIYAVQWHPEKAPFEWKKLRGISHAPNAVKTSFYLAKFFISEALKNDH 283          
BLAST of CB250270 vs. ExPASy Swiss-Prot
Match: GGH_HUMAN (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.162e-14
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   25 HHYGISPERMQANQELAKFFKILTTSMDEYNKV-YVSTVQAYNYPVTAFQWHPEKNAFEW-GPKAIPHTEDAIRVTQQAANFFISEARKSSN 294
            H + +S +    N++L KFF +LTT+ D   K+ ++ST++ Y YPV   QWHPEK  +EW     I H  +A++     A FF++EARK+++
Sbjct:  195 HKWSLSVKNFTMNEKLKKFFNVLTTNTD--GKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNH 284          
The following BLAST results are available for this feature:
BLAST of CB250270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GGH_ARATH2.703e-3767.31Gamma-glutamyl hydrolase OS=Arabidopsis thaliana G... [more]
GGH_SOYBN1.436e-3060.95Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1[more]
GGHA_DICDI2.151e-1840.43Gamma-glutamyl hydrolase A OS=Dictyostelium discoi... [more]
GGHB_DICDI1.395e-1739.39Gamma-glutamyl hydrolase B OS=Dictyostelium discoi... [more]
GGH_BOVIN8.460e-1540.66Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2... [more]
GGH_MOUSE1.885e-1438.83Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE... [more]
GGH_RAT7.162e-1439.56Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=G... [more]
GGH_HUMAN7.162e-1439.13Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0041 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ052 similar to gamma glutamyl hydrolase (acc# NP_177987), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250270 ID=CB250270; Name=CB250270; organism=Citrus sinensis; type=EST; length=313bp
ACGGATTGCCTGGTTATGCAAAACCACCATTATGGCATTTCACCCGAAAG
AATGCAAGCAAACCAGGAGCTAGCTAAGTTTTTTAAGATCTTGACAACAA
GCATGGATGAATATAATAAGGTCTATGTCTCGACAGTGCAAGCTTATAAC
TATCCTGTGACCGCCTTCCAATGGCATCCAGAGAAAAATGCTTTTGAATG
GGGGCCAAAAGCAATTCCACACACAGAGGACGCCATTCGGGTGACTCAAC
AAGCTGCAAACTTTTTTATAAGCGAGGCTAGGAAGTCATCAAACAGGCCA
CCTGCTCGAAAAG
back to top