CB250295

Overview
NameCB250295
Unique NameCB250295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig127 contig Csv1_Contig127:502..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.335e-34
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y ++ ++V+K GLKL   + FH           IPLP WV  IGES   IFYT++SG + +  LS+ VD+ P+  G+T I++Y ++ +SF+ +    +    I  I +GLGP GELRYPS+ +  +  + PG+GEFQC D+ +    +  A   G+  W L  P DA +Y++ P S  FFK N G++ +  G FFL+W
Sbjct:   69 DWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVNIPLPKWVLDIGESDPDIFYTNRSGIRNQEYLSIGVDNKPIFHGRTAIEIYSDYMKSFRENMSDLLKSEVIIDIEVGLGPAGELRYPSYPQ-NQGWQFPGIGEFQCYDKYLRESFKAAAAKAGHSEWEL--PDDAGTYNDVPESTEFFKTN-GTYLTEKGKFFLTW 266          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y ++ ++V++ GLKL   + FH           IP+P WV  IGES   IFYT++SG + K  L++ VD+ P+  G+T I+VY ++ +SF+ +   F+    I  I +GLGP GELRYPS+ +  +    PG+GEFQC D+ +    +  A   G+  W L  P DA +Y++ P S  FFK N G++ +  G FFL+W
Sbjct:   69 DWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTIGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFLKSEVIIDIEVGLGPAGELRYPSYPQ-NQGWVFPGIGEFQCYDKYLKAEFKAAAARAGHSEWEL--PDDAGTYNDVPESTEFFKTN-GTYLTEKGKFFLTW 266          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 78/202 (38.61%), Postives = 116/202 (57.43%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y  V ++V + GLKL   + FH           IP+P WV  +G +   IFYT++ G +    L+L VDD P+  G+T +Q+Y ++  SF+ + K F+   TI  I +GLGP GE+RYPS+ + ++    PG+GEF C D+ +    +  A   G+P W L  P DA  Y+++P    FFKDN G++ +  G FFLSW
Sbjct:   66 DWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVNIPIPQWVRDVGATDPDIFYTNRGGTRNIEYLTLGVDDQPLFHGRTAVQMYADYMASFRENMKKFLDAGTIVDIEVGLGPAGEMRYPSYPQ-SQGWVFPGIGEFICYDKYLEADFKAAAAKAGHPEWEL--PDDAGEYNDTPEKTQFFKDN-GTYLTEKGKFFLSW 263          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.624e-34
Identity = 78/202 (38.61%), Postives = 119/202 (58.91%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y ++ ++V++ GLKL   + FH           IP+P WV  IGES   IFYT++SG + K  L++ VD+ P+  G+T I++Y ++ +SF+ +   F+    I  I +GLGP GELRYPS+ +  +    PG+GEFQC D+ +    +  A   G+  W L  P DA +Y++ P S  FFK N G++ +  G FFL+W
Sbjct:   69 DWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTVGVDNKPIFHGRTAIEIYSDYMKSFRENMSEFLKSELIIDIEVGLGPAGELRYPSYPQ-NQGWVFPGIGEFQCYDKYLKADFKAAAAKAGHSEWEL--PDDAGTYNDIPESTEFFKTN-GTYLTEKGKFFLTW 266          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 7.324e-33
Identity = 75/202 (37.13%), Postives = 118/202 (58.42%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHALKQP-----KIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +W  Y ++ ++V++ GL L   + FH           IP+P WV  IGES   IFYT++SG + K  L++ VD+ P+  G+T I++Y ++ +SF+ +   F+ +  I  I +GLGP GELRYPS+ + ++  + P +GEFQC D+ +    +      G+P W L  P DA  Y++ P S  FFK N G++ +  G FFL+W
Sbjct:   69 DWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQ-SQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSN-GTYVTEKGKFFLTW 266          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.249e-32
Identity = 76/202 (37.62%), Postives = 117/202 (57.92%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y  V ++V++ GLKL   +  H           IP+P WV  +G+S   IFYT++SG      L+L VDD P+  G+T IQ+Y ++ +SF+ +   F+    +  I +GLGP GE+RYPS+ + ++    PGVGEF C D+ +    +  AE  G+P W L    DA +Y+++P    FF DN G++++  G FFL+W
Sbjct:   66 DWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDVGKSNPDIFYTNRSGLTNIEYLTLGVDDQPLFHGRTAIQLYADYMKSFRENMADFLDAGVVVDIEVGLGPAGEMRYPSYPQ-SQGWVFPGVGEFICYDKYLQADFKAAAEEAGHPEWDLL--DDAGTYNDTPEKTQFFADN-GTYQTDKGKFFLTW 263          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.249e-32
Identity = 75/202 (37.13%), Postives = 114/202 (56.44%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y  + E+V+K GLKL   + FH           IP+P WV  +G     IFYTD  G +    L+L VD+ P+  G++ +Q+Y ++  SF+ + K F+    I  I +GLGP GE+RYPS+ + +     PG+GEF C D+ +    +  A A G+P W    P+DA  Y+++P    FF+DN G++ +  G FFL+W
Sbjct:   66 DWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDAGQYNDTPERTQFFRDN-GTYLTEKGRFFLAW 263          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.632e-32
Identity = 75/202 (37.13%), Postives = 113/202 (55.94%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFMGT-TITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y  + E+V+K GLKL   + FH           IP+P WV  +G     IFYTD  G +    L+L VD+ P+  G++ +Q+Y ++  SF+ + K F+    I  I +GLGP GE+RYPS+ + +     PG+GEF C D+ +    +  A A G+P W    P+D   Y+++P    FF+DN G++ S  G FFL+W
Sbjct:   66 DWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGEMRYPSYPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDVGQYNDTPERTQFFRDN-GTYLSEKGRFFLAW 263          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.747e-32
Identity = 70/202 (34.65%), Postives = 115/202 (56.93%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHALKQP-----KIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +W+ Y  + +++ ++GLK+   + FH           IP+P WV  +G++   I+YT++ G +    LS+ VD+LP+  G+T +Q+Y ++  SFK +    +    I  I +GLGP GELRYPS+ + ++    PG+GEFQC D+ +    +  A   G+P W L  P DA  Y++ P    FFK + G++ S  G FF++W
Sbjct:   71 DWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVTIPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLSIGVDNLPLFAGRTAVQLYSDYMSSFKENMADLIEAGVIVDIEVGLGPAGELRYPSYPQ-SQGWVFPGIGEFQCYDKYLKKDFKEAAAKAGHPEWDL--PEDAGEYNDKPEETGFFKKD-GTYVSEKGKFFMTW 268          
BLAST of CB250295 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 133.65 bits (335), Expect = 6.855e-31
Identity = 71/202 (35.15%), Postives = 117/202 (57.92%), Query Frame = 3
Query:    3 NWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM-GTTITGISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQRHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSW 590
            +WS Y  + ++V+K GLK+   + FH           IP+P W+ QIG+    IFYT+++G + +  LSL VD+  +  G+T +++Y++F ESF+ +   F+    I  I +G G  GELRYPS+    +    PG+GEFQC D+ M+   +   +  GN  W + G   A +Y+++P+   FF+ N G++++  G FFL+W
Sbjct:   70 DWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYPSYPE-TQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPG-KGAGTYNDTPDKTEFFRPN-GTYKTDMGKFFLTW 268          
The following BLAST results are available for this feature:
BLAST of CB250295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_MEDSA1.335e-3439.11Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN1.743e-3439.11Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_WHEAT3.883e-3438.61Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP6.624e-3438.61Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_SOYBN7.324e-3337.13Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_MAIZE1.249e-3237.62Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_HORSP1.249e-3237.13Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_HORVU1.632e-3237.13Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_ARATH4.747e-3234.65Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_IPOBA6.855e-3135.15Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionEST0073 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ099 similar to beta-amylase (acc# AAD38148), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250295 ID=CB250295; Name=CB250295; organism=Citrus sinensis; type=EST; length=590bp
ACAATTGGTCTGGCTACCTTGCTGTTGCAGAGATGGTTGAAAAAATAGGT
CTCAAGCTTCATGTGTCACTCTGCTTCCATGCTTTGAAACAGCCAAAAAT
TCCGCTCCCCGATTGGGTCTCCCAAATTGGTGAGTCCCAATCAAGCATCT
TTTACACAGATCAGTCAGGGCAGCAATTCAAAGGTTGCCTATCATTGGCC
GTTGATGATCTTCCAGTTCTTGATGGGAAAACTCCAATTCAAGTTTACCA
AGAATTTTGCGAGAGCTTTAAGTCTTCATTCAAGCCTTTCATGGGCACGA
CAATAACGGGCATCTCGATGGGTCTAGGACCAGATGGTGAACTTCGGTAT
CCATCTCACCACCGACTAGCCAAAAGTAGCAAAATCCCTGGAGTTGGAGA
ATTCCAGTGTTGTGACAGAAACATGCTTAACCTTCTTCAGCGACATGCCG
AAGCAAATGGAAATCCTTTATGGGGACTTCGTGGTCCCCATGATGCCCCC
AGTTATGATGAGTCACCTAACTCAAACAGTTTCTTTAAGGATAATGGTGG
TTCCTGGGAGTCTCCCTATGGTGACTTTTTCCTTTCCTGG
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