CB250296
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB250296 vs. ExPASy Swiss-Prot
Match: STAG1_MOUSE (Cohesin subunit SA-1 OS=Mus musculus GN=Stag1 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12 Identity = 58/209 (27.75%), Postives = 96/209 (45.93%), Query Frame = 3 Query: 12 MKDWKCIISMLLDENPLID--LNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIK-FCSAESQGELQ-DSARKNLKD---------VEDXXXXXXXXXXXXVLDGDDEYSLLVNLKRL 599 +KDW+C+ +LL+E + ++D + LI L+ ++++A K +++ +++ ++T + P LL K+ AD KV +L+ I + LE+YS R EK + +L+ + KH E + L +C K CS E + + D AR L D VED D DD Y++L LKRL Sbjct: 496 LKDWECMTELLLEEPVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVESDVLEACSKTYSILCSEEYTIQNRVDIARSQLIDEFVDRFNHSVEDLLQEGEE------ADDDDIYNVLSTLKRL 698
BLAST of CB250296 vs. ExPASy Swiss-Prot
Match: STAG1_HUMAN (Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3) HSP 1 Score: 73.9442 bits (180), Expect = 1.156e-12 Identity = 58/209 (27.75%), Postives = 96/209 (45.93%), Query Frame = 3 Query: 12 MKDWKCIISMLLDENPLID--LNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIK-FCSAESQGELQ-DSARKNLKD---------VEDXXXXXXXXXXXXVLDGDDEYSLLVNLKRL 599 +KDW+C+ +LL+E + ++D + LI L+ ++++A K +++ +++ ++T + P LL K+ AD KV +L+ I + LE+YS R EK + +L+ + KH E + L +C K CS E + + D AR L D VED D DD Y++L LKRL Sbjct: 496 LKDWECMTELLLEEPVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVESDVLEACSKTYSILCSEEYTIQNRVDIARSQLIDEFVDRFNHSVEDLLQEGEE------ADDDDIYNVLSTLKRL 698
BLAST of CB250296 vs. ExPASy Swiss-Prot
Match: STAG2_XENLA (Cohesin subunit SA-2 OS=Xenopus laevis GN=stag2 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12 Identity = 55/212 (25.94%), Postives = 92/212 (43.40%), Query Frame = 3 Query: 12 MKDWKCIISMLLDE--NPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKA--------------IKFCSAESQGELQDSARKNLKDVEDXXXXXXXXXXXXVLDGDDEYSLLVNLKRL 599 +KDW C+ S+LLD+ N L D + LI +L +V++A K +K+ ++K +T + P+LL K+ D KV +L+ + + LE+Y+ R EK E +L+ + + KH + + L +C K + ++ EL D + L+D LD DD Y +L LKR+ Sbjct: 423 LKDWDCMNSLLLDDPLNGEEALTDRQESALIEILLCTVRQAAECHPPVGRGTGKRVLTAKEKKSQMDDKTHLTELFAVSLPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLEALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIYNRVDIAKSQLIDELADKFNRLLED---------FLQEEEELDEDDAYQVLSTLKRI 625
BLAST of CB250296 vs. ExPASy Swiss-Prot
Match: STAG3_HUMAN (Cohesin subunit SA-3 OS=Homo sapiens GN=STAG3 PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11 Identity = 63/223 (28.25%), Postives = 102/223 (45.74%), Query Frame = 3 Query: 12 MKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAV-GERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKF-CSAE-SQGELQDSARKNLKDV--EDXXXXXXXXXXXXVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMIL 665 +KDW+ + S+LL+++ +L D + LI +L +S ++A G V RK +K +K ++ + +T ++ P+LL KF AD KV L+ ++ L +Y R EK E LQ + + KH E L + A+ C+ E + D AR L D+ + LD D+ Y+L LKRL + + LYE +L Sbjct: 509 LKDWEGLTSLLLEKDQ--NLGDVQESTLIEILVSSARQASEGHPPVGRVTGRKGLTSKERKTQADDRVK-LTEHLIPLLPQLLAKFSADAEKVTPLLQLLSCFDLHIYCTGRLEKHLELFLQQLQEVVVKHAEPAVLEAGAHALYLLCNPEFTFFSRADFARSQLVDLLTDRFQQELEELLQSSFLDEDEVYNLAATLKRLSAFYNTHDLTRWELYEPCCQLL 728
BLAST of CB250296 vs. ExPASy Swiss-Prot
Match: STAG1_XENLA (Cohesin subunit SA-1 OS=Xenopus laevis GN=stag1 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11 Identity = 48/203 (23.65%), Postives = 98/203 (48.28%), Query Frame = 3 Query: 12 MKDWKCIISMLLDENPLID--LNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIK-FCSAE--SQGELQDSARKNLKDVEDXXXXXXXXXXXXVLDGDDE--YSLLVNLKRL 599 +KDW+C+ +L++E + +++ + L+ L+ ++++A K +++ ++K ++T + P LL K+ AD KV +L+ I + LELYS R EK +++L+ + KH E + L +C K CS E Q ++ + + + ++ D + D++ Y+++ +LKRL Sbjct: 503 LKDWECMTELLVEEPMQGEEVMSERQESALVELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQLDDKTKLTEHFIVALPVLLSKYSADAEKVANLLQIPQYFDLELYSTGRMEKHLDSLLKQIRFVVEKHIESDVLEACSKTYSILCSEEYTIQNRVEIAHSQLIDELADRFSHAVEELLQEAEEADEDEIYNVMASLKRL 705
BLAST of CB250296 vs. ExPASy Swiss-Prot
Match: STAG3_RAT (Cohesin subunit SA-3 OS=Rattus norvegicus GN=Stag3 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11 Identity = 55/200 (27.50%), Postives = 91/200 (45.50%), Query Frame = 3 Query: 12 MKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKF-CSAE-SQGELQDSARKNLKDV--EDXXXXXXXXXXXXVLDGDDEYSLLVNLKRL 599 +KDW+ + S+LL ++ +L D LI +L +S ++A K ++++ +K ++ ++ P+LL KF AD V L+ ++ + L +Y +R EK E +LQ + + KH E E L + A+ C E + D AR L D+ + LD D+ YSL LKRL Sbjct: 524 LKDWESLTSLLLQKDQ--NLGDMQERMLIEILVSSARQAAEGHPPVGRITGKKSLTAKERKLQAYDKVKLAEHLIPLLPQLLAKFSADAENVAPLLRLLSYFDLNIYCTQRLEKHLELLLQQLQEVVVKHVEPEVLEAAAHALYLLCKPEFTFFSRVDFARSQLVDLLTDRFQQELDDLMQSSFLDEDEVYSLTATLKRL 721
BLAST of CB250296 vs. ExPASy Swiss-Prot
Match: STAG2_HUMAN (Cohesin subunit SA-2 OS=Homo sapiens GN=STAG2 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11 Identity = 56/210 (26.67%), Postives = 97/210 (46.19%), Query Frame = 3 Query: 12 MKDWKCIISMLLDENPLID---LNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAI-KFCSAE---------SQGELQDS-ARKNLKDVEDXXXXXXXXXXXXVLDGDDEYSLLVNLKRL 599 +KDW+C+ S+LL+E PL L D + LI ++ ++++A K +K+ +++ +IT P+LL K+ D KV +L+ + + LE+Y+ R EK + +L+ + + KH + + L +C K C+ E S+ +L D A K + +ED D DD Y +L LKR+ Sbjct: 492 LKDWECMNSLLLEE-PLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDRTKITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEP------DEDDAYQVLSTLKRI 694 The following BLAST results are available for this feature:
BLAST of CB250296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB250296 ID=CB250296; Name=CB250296; organism=Citrus sinensis; type=EST; length=812bpback to top |