CB250298

Overview
NameCB250298
Unique NameCB250298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10820 contig Csv1_Contig10820:481..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 3
Query:    3 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 167
            SMTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:  120 SMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 3
Query:    3 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 170
            SMTKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:  119 SMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.138e-19
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 3
Query:    3 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 167
            S+ +AF I F+MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:  141 SIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   12 KAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 170
            +A  I+ +++ FS+FD+PVFWPILL Y+I+LF LTMRRQI HMIKYRYIP +I
Sbjct:  126 RATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDI 178          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    9 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 164
            TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  126 TKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    9 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 164
            TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  126 TKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    9 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 164
            TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  126 TKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   12 KAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 170
            +A  I+ V++ FS+FD+PVFWPILL Y+++LF LTMRRQI HM+KYRYIP +I
Sbjct:  126 RATVISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDI 178          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    9 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 164
            TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  126 TKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of CB250298 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.312e-15
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    9 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 164
            TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  126 TKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
The following BLAST results are available for this feature:
BLAST of CB250298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1A_ARATH2.000e-2594.55Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH3.411e-2591.07Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH8.138e-1972.73Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_YEAST7.130e-1566.04Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_PONAB7.130e-1567.31Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN7.130e-1567.31Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_BOVIN7.130e-1567.31Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_SACPS9.312e-1564.15Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_RAT9.312e-1565.38Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE9.312e-1565.38Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionEST0077 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ105 similar to AtRer1A (acc# NP_195633), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250298 ID=CB250298; Name=CB250298; organism=Citrus sinensis; type=EST; length=601bp
ACTCCATGACCAAGGCTTTCTGCATAGCTTTTGTAATGACATTCTTTTCT
GTGTTTGATGTTCCTGTGTTTTGGCCTATATTACTTTGTTACTGGATTGT
TCTGTTTGTTCTTACAATGAGACGCCAAATCGCACACATGATCAAATACA
GATATATCCCGTTCAACATTGGAAAACAGAAGTATGGTGGTAAGAAACCT
TCATCAAGTGGCGGTGGCTCCCGTGGGGACTGAAGCAGAACTTATTCACA
GAGCCAGTAGAAAAAGGACTGGATGGGGATAAAAAAATAGGTTATGGGAA
GATATTATAATTGAATTTTTTCCTTTCAAGGGACATGCACTTGGTTATTA
TGAATGAAGCTTATAGTAGACATAAAGTTCAATAGTGCGGGATTGCTAAA
ATGTTGCAGAATTGAAACTTTAATGTTTACGCTCATGTTATGAAGATTCC
AAGATTGTTGGCAATGTAATTGCATGACCCATTATAACAAAGATTTTACG
GGAAATTTTTCATTCGTTTATCGGTTAGTGTAATGTTGTCAAAAGCCTTT
GTCATCCCACATGGTTTACTGGAAGATAGCATGGAAACACTATTTGTATT
G
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