CB250308

Overview
NameCB250308
Unique NameCB250308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5968 contig Csv1_Contig5968:474..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.175e-57
Identity = 110/141 (78.01%), Postives = 126/141 (89.36%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            GEF HLP  RFYDFSEIRREI+A+T++  G NKGV+D QIRLKI SP+VL+ITLVDLPGITKVPVG+QP+DIEARIRTMI+SYIKQ +CLILAVTPAN+DLANSDALQIA I DPDG+RTIG+ITKLDIMD+GT A   L+
Sbjct:  117 GEFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMILSYIKQDTCLILAVTPANTDLANSDALQIASIVDPDGHRTIGVITKLDIMDKGTDARKLLL 257          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 2.217e-56
Identity = 110/142 (77.46%), Postives = 128/142 (90.14%), Query Frame = 3
Query:    3 GEFLHL-PGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTLI 425
            GEFLH  P +R YDFSEIRREI+A+T++ +G NKGVSD  I LKIFSP+VLDI+LVDLPGITKVPVG+QP+DIEARIRTMI++YIK+PSCLILAV+PAN+DLANSDALQIAG ADPDG+RTIG+ITKLDIMDRGT A   L+
Sbjct:  101 GEFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPVGDQPSDIEARIRTMILTYIKEPSCLILAVSPANTDLANSDALQIAGNADPDGHRTIGVITKLDIMDRGTDARNHLL 242          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 2.222e-48
Identity = 92/140 (65.71%), Postives = 113/140 (80.71%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            GEFLH P   FYDFSEIR EI   TD+  G NKG+S + I LKI+SPHV+++TLVDLPGITKVPVG+QP DIE +IR M+M+YIK+ + +I+AVTPAN+DLANSDALQ+A   DP+G RTIG+ITKLD+MD+GT A   L
Sbjct:   83 GEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVL 222          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 8.443e-48
Identity = 89/140 (63.57%), Postives = 114/140 (81.43%), Query Frame = 3
Query:    3 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            GEFLH+PGKRFYDF +I+REI+ +T + AG +KG+S   I LK+FSPHVL++TLVDLPGITKVP+GEQP DIE +I+ +I+ YI  P+CLILAV+PAN DL NS++L++A   DP G RTIG+ITKLD+MD GT+A   L
Sbjct:  120 GEFLHIPGKRFYDFDDIKREIENETARIAGKDKGISKIPINLKVFSPHVLNLTLVDLPGITKVPIGEQPPDIEKQIKNLILDYIATPNCLILAVSPANVDLVNSESLKLAREVDPQGKRTIGVITKLDLMDSGTNALDIL 259          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 2.457e-47
Identity = 89/139 (64.03%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  GK+F DF E+R EI+A+TD+  G NKG+S   I L+++SPHVL++TL+DLPGITKVPVG+QP DIE +IR MIM +I + +CLILAVTPAN+DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.209e-47
Identity = 89/139 (64.03%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  GK+F DF E+R EI+A+TD+  G NKG+S   I L+++SPHVL++TL+DLPGITKVPVG+QP DIE +IR MIM +I + +CLILAVTPAN+DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN3_HUMAN (Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4)

HSP 1 Score: 186.037 bits (471), Expect = 5.473e-47
Identity = 89/139 (64.03%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  GK+F DF E+R EI+A+TD+  G NKG+S   I L+++SPHVL++TL+DLPGITKVPVG+QP DIE +IR MIM +I + +CLILAVTPAN+DLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.219e-46
Identity = 88/139 (63.31%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  GK+F DF E+R EI+A+TD+  G NKG+S   I L+++SPHVL++TLVDLPG+TKVPVG+QP DIE +IR M+M ++ + +CLILAV+PANSDLANSDAL+IA   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN1_MOUSE (Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.219e-46
Identity = 88/139 (63.31%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  GK+F DF E+R EI+A+TD+  G NKG+S   I L+++SPHVL++TLVDLPG+TKVPVG+QP DIE +IR M+M ++ + +CLILAV+PANSDLANSDAL+IA   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVL 220          
BLAST of CB250308 vs. ExPASy Swiss-Prot
Match: DYN1_HUMAN (Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.592e-46
Identity = 87/139 (62.59%), Postives = 111/139 (79.86%), Query Frame = 3
Query:    6 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTSAATTL 422
            EFLH  GK+F DF E+R EI+A+TD+  G NKG+S   I L+++SPHVL++TLVDLPG+TKVPVG+QP DIE +IR M+M ++ + +CLILAV+PANSDLANSDAL++A   DP G RTIG+ITKLD+MD GT A   L
Sbjct:   82 EFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVL 220          
The following BLAST results are available for this feature:
BLAST of CB250308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DRP3A_ARATH1.175e-5778.01Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DRP3B_ARATH2.217e-5677.46Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DYNA_DICDI2.222e-4865.71Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
DNM1_YEAST8.443e-4863.57Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
DYN3_RAT2.457e-4764.03Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DYN3_MOUSE3.209e-4764.03Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1[more]
DYN3_HUMAN5.473e-4764.03Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4[more]
DYN1_RAT1.219e-4663.31Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]
DYN1_MOUSE1.219e-4663.31Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2[more]
DYN1_HUMAN1.592e-4662.59Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionEST0092 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ129 similar to dynamin-like protein ADL2 (acc# BAB86118), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250308 ID=CB250308; Name=CB250308; organism=Citrus sinensis; type=EST; length=436bp
ACGGCGAGTTCTTGCACTTGCCTGGGAAAAGGTTTTATGATTTTTCCGAG
ATCAGGAGAGAGATTCAGGCTCAAACTGACAAGGAAGCTGGAGGAAACAA
AGGTGTGTCAGACAAGCAAATCCGTTTGAAGATTTTTTCACCTCACGTTC
TTGATATCACACTTGTGGATCTGCCTGGTATAACAAAGGTCCCAGTTGGT
GAGCAGCCAGCTGATATTGAAGCACGAATTAGAACGATGATTATGTCATA
TATCAAGCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAG
ATTTGGCAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGAT
GGTTATAGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGG
TACCTCGGCCGCGACCACGCTAATCACTAGTGAATT
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