CB250310

Overview
NameCB250310
Unique NameCB250310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12385 contig Csv1_Contig12385:415..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB250310 vs. ExPASy Swiss-Prot
Match: CDS1_SOLTU (Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.456e-23
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3 
Query:    3 GITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS 200
            G+TDRMDCQMVMAVFAYIYHQSFIVPQ+  +EMIL+QI+  LT+EEQ A+Y KLG+I+QER FG+S
Sbjct:  359 GMTDRMDCQMVMAVFAYIYHQSFIVPQNLSIEMILDQIILNLTFEEQLAVYKKLGQIIQERTFGES 424
[Close]
BLAST of CB250310 vs. ExPASy Swiss-Prot
Match: CDS1_ARATH (Phosphatidate cytidylyltransferase OS=Arabidopsis thaliana GN=CDS1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.656e-19
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 3 
Query:    3 GITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL 188
            GITDRMDCQMVMAVFAYIY QSFIV QS  V+ IL+QILT LT+EEQ+AL++KLG++L+++L
Sbjct:  359 GITDRMDCQMVMAVFAYIYLQSFIVSQSVSVDKILDQILTNLTFEEQQALFVKLGQMLKDKL 420
The following BLAST results are available for this feature:
BLAST of CB250310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CDS1_SOLTU6.456e-2374.24Phosphatidate cytidylyltransferase OS=Solanum tube... [more]
CDS1_ARATH5.656e-1972.58Phosphatidate cytidylyltransferase OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionEST0095 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ133 similar to phosphatidate cytidylyltransferase (acc# O04940), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250310 ID=CB250310; Name=CB250310; organism=Citrus sinensis; type=EST; length=346bp
GTGGGATCACTGATAGAATGGATTGCCAGATGGTGATGGCCGTATTTGCA
TACATCTATCATCAGTCCTTTATTGTTCCTCAAAGCTTCAGGGTTGAAAT
GATATTGGAGCAGATACTGACGGCTCTTACATACGAGGAGCAGAAAGCTC
TATACATGAAGCTTGGTGAAATCTTGCAGGAAAGGCTATTTGGACAATCA
TAGATCAATGCTAAAAGAAGATCCTGTATATGTTGTGTTTTCCCATTTTT
TTTATTAGAAAATATTTAGGTGGAGGAAGTTTTAGTTTGCACACTGTATA
GTGTATTTTAGTCAATTAATACGCATAAACTGCCAGAAAATTGTTG
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