CB250315

Overview
NameCB250315
Unique NameCB250315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7087 contig Csv1_Contig7087:402..1122. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 1.278e-118
Identity = 197/240 (82.08%), Postives = 223/240 (92.92%), Query Frame = 1
Query:    1 FKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQD 720
            F+ A+  LS++ SEGG+QL+VP GKWLTGSF+LTSHFTLFLH+DAVLLASQD  +WPVI+PLPSYGRGRD   GRY+SLIFGTNLTDV+ITGDNGTIDGQG LWW++F  G+LKYTRPYLIE+M+S +IQISNLTL+NSPSWNV PVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQD
Sbjct:   82 FQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQD 321          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  238 IFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594
            I  T++  +VI GD G I+GQG  WW      E K +RP  ++     N+++S LT ++SP  ++     + V +  + I AP +SPNTDGI+  + +N  I+DC I +GDDC+A+ SG
Sbjct:  107 ILFTDIEGLVIEGD-GEINGQGSSWW------EHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  253 LTDVVITGDNGTIDGQGELWWRKFRAGELKYT----------RPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594
            LTD  + G  G IDGQG+ WW    AG+ K            RP  I+I +S+++ +  LTL+NSP +++       V +QG+ I AP  SPNTDGI+  +     IE C I +GDDC+A+ +G
Sbjct:  145 LTDFNLMG-TGVIDGQGQQWW----AGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG 263          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 68/196 (34.69%), Postives = 94/196 (47.96%), Query Frame = 1
Query:   37 SEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WW---RKFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 591
            S G S +F      L+G  +L S  +L + K   L A  + K +   E  PS     DT G    + I  T+ T+  I G  GTIDGQG +        WW      +  +LK   P LI+I  S+N  + N++LINSP+++V             TI  P T+ NTDGI+P S  N  I    I +GDD VA+K+
Sbjct:   71 SAGSSSVF------LSGPLSLPSGVSLLIDKGVTLRAVNNAKSF---ENAPSSCGVVDTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKA 256          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 55/142 (38.73%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  253 LTDVVITGDNGTIDGQGELWWR---KFRAGELKYT---RPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTC 660
            LTD  + G  G IDGQG  WW    K   G        RP  I+I  S+++ +  LTL NSP +++       V +QGI I AP  SPNTDGI+  +     IE C I +GDDCVAV +G           +  + I+ LTC
Sbjct:  146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTC 275          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.831e-14
Identity = 62/183 (33.88%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   76 WLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEL--------WWR---KFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 591
            +L+G  +L S  +L + K   L A  + K +   E  PS     D  G    + I   + T+  I G  GTIDGQG +        WW      +  +LK   P LI+I  S+N  + N++LINSP+++V             TI  P T+ NTDGI+P S  N  I    I +GDD VA+K+
Sbjct:   78 FLSGPLSLPSGVSLLIDKGVTLRAVNNAKSF---ENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA 256          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  361 IEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG-WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQD 720
            + ++     Q+   T+ N+ SW + P     +     TI+AP  SPNTDG NP+SC N  I       GDDC+AVK+G     G    +   + I  R   + P    + +GSEMSGG+ D
Sbjct:   25 LHLVSCHKTQLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHD 145          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  274 GDNGTIDGQGELWWR---KFRAGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594
            GD G +DG GE WW+   K    +     P  +   +S+++ + NL + N+    +     S+V V  + + AP  SPNTDGI+  +  N R+ +  I +GDDC++++SG
Sbjct:  163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG 272          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 38/114 (33.33%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  259 DVVITGDNGTIDGQGELWWRKFRAGELKYTR--PYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 594
            ++V+TG  GT  G+GE  W+    G+       P  ++  + +N++I+ ++ +N+ ++++  V + +V +Q I + AP  SPNTDGI+  +  N  I D  I +GDDCV+V  G
Sbjct:  137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRG 249          
BLAST of CB250315 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 54/195 (27.69%), Postives = 90/195 (46.15%), Query Frame = 1
Query:   43 GGSQLFVPPGKWLTGSFNLTSHFT--LFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYT---RPYLIEIMHSQNIQISNLTLINSPSWNVRPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGI 612
            G   + +P G +L G  N T      + +  D  LLA+ D  ++               E G +  ++   NL   VITG  G +DGQG   W K    + KY     P  + +    N ++S +TL+NS  +++      +++++ +T+ AP  SPNTDGI+    +   I +  I  GDDC+++  G  +  I
Sbjct:   72 GKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK--------------EHGNWIEILRVDNL---VITG-KGNLDGQGPAVWSKNSCTK-KYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNI 247          
The following BLAST results are available for this feature:
BLAST of CB250315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PGLR_VITVI1.278e-11882.08Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR3_ARATH8.247e-1738.66Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_CHAOB1.555e-1539.52Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR1_PECCC1.555e-1534.69Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR2_JUNAS2.933e-1438.73Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR2_PECCC3.831e-1433.88Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR_RHIRD2.483e-1334.71Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
ADPG2_ARATH9.436e-1332.73Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR1_ARATH7.988e-1233.33Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR2_MAIZE1.363e-1127.69Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionEST0100 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ140 similar to polygalacturonase (acc# NP_194081), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250315 ID=CB250315; Name=CB250315; organism=Citrus sinensis; type=EST; length=721bp
TTTAAGGCCGCAATTGATCATTTGAGTCGGTTCCAGTCAGAAGGAGGGTC
CCAACTGTTTGTTCCTCCTGGAAAATGGCTGACTGGAAGCTTCAATCTCA
CCAGCCATTTCACTTTGTTTCTTCACAAGGATGCTGTTCTTCTTGCTTCC
CAGGATGAGAAAGAATGGCCTGTGATCGAGCCTTTGCCATCCTACGGTAG
AGGAAGGGACACAGAAGGTGGAAGGTATAGCAGTCTTATTTTTGGAACCA
ACCTCACTGATGTTGTCATAACAGGGGACAATGGAACTATTGATGGTCAG
GGTGAGCTCTGGTGGCGAAAATTTCGTGCGGGAGAGCTAAAGTATACCCG
CCCATACCTTATTGAAATCATGCACTCACAGAATATTCAAATATCCAACC
TCACATTGATCAATTCCCCATCCTGGAATGTTCGTCCTGTTTATAGCAGT
AGTGTCATAGTTCAAGGCATAACGATCCTAGCGCCGGTGACATCTCCAAA
CACTGATGGTATTAATCCTGATTCTTGCACAAACACCAGAATAGAGGACT
GCTACATTGTATCAGGGGATGACTGTGTAGCAGTTAAAAGTGGCTGGGAT
CAGTATGGTATTGCTTACGGGATGCCAACAAAGCAGCTTATTATCAGACG
CCTAACGTGCATTTCTCCATTCAGTGCAGTGATTGCACTGGGAAGTGAGA
TGTCCGGTGGGATTCAGGACG
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