CB250331

Overview
NameCB250331
Unique NameCB250331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10620 contig Csv1_Contig10620:112..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250331 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.782e-24
Identity = 60/139 (43.17%), Postives = 81/139 (58.27%), Query Frame = 1
Query:   43 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYT 459
            +L G+V               +LF K+GA+VV+AD+QD LG +L  +LG     Y+HCDV+NE +V   VD  VA+FGKLD++ N    +       + +  K D E +LAVN +G FL  KHAARVM P RRG I+ T
Sbjct:   14 KLVGKVAVITGGASGIGACTARLFVKHGARVVVADIQDELGASLVAELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFN-NAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSIIST 151          
BLAST of CB250331 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.136e-17
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   43 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKF-GKLDILVNTGCNL--EYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCIL 453
            RL G+V               +LF K+GA+VVIAD+ D  G+ALA  LG Q V ++ CDVS E +V   VD  +++  G+LD+  N    L  + R   SIL    ++ + +L VN +G  L  KHAAR M PRR G I+
Sbjct:   52 RLDGKVAIVTGGARGIGEAIVRLFAKHGARVVIADIDDAAGEALASALGPQ-VSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIV 190          
BLAST of CB250331 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 55/143 (38.46%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   37 SIRLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKL----GNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCIL 453
            S RL G+V               +LFHK+GAKV I D+QD+LG  +   L      +   +IH DV  E ++ N VD  V  FG LDIL+N    L       I +   S+ E    VN  G FL  KHAARVM+P ++G I+
Sbjct:   15 SQRLLGKVALITGGATGIGESIVRLFHKHGAKVCIVDLQDDLGGEVCKSLLRGESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNA-GLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIV 156          
BLAST of CB250331 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 42/138 (30.43%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   46 LQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGNQ--DVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCIL 453
            L+G+V               QLF +NG KVVIA++ +  G    + L  +  DV ++  DV++E  V N+V  TV  +G +D+LVN    +  +   SI + P  + E ++ VN  G ++ +++ A  M+ R  G I+
Sbjct:    2 LEGKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVK---SIFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVII 136          
BLAST of CB250331 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  106 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYT 459
            Q F    A VV+AD+ +  G+A+  K  N  + ++  D++NE    N + + V KFG LD+L+N   N        I +   SD   +L VN  G FL++KHA + M+   +G I+ T
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVQTDITNEPACQNAILSAVDKFGGLDVLIN---NAGIEIVAPIHEMELSDWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINT 137          
BLAST of CB250331 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  106 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYT 459
            Q F    A VV+AD+ +  G+A+  K  N  + ++H D+++E    N + + V KFG LD+L+N   N        I +   S+   +L VN  G FL++KHA + M+   +G I+ T
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTDITDEPACQNAIRSAVDKFGGLDVLIN---NAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINT 137          
The following BLAST results are available for this feature:
BLAST of CB250331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MOMAS_ORYSJ7.782e-2443.17Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
TS2_MAIZE4.136e-1740.00Sex determination protein tasselseed-2 OS=Zea mays... [more]
ABA2_ARATH4.573e-1638.46Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
Y019_THEMA4.006e-1230.43Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
BACC_BACAM7.555e-1133.90Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC2_BACSU7.555e-1133.05Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
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Properties
Property NameValue
Genbank descriptionEST0119 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ174 similar to wts2L protein (acc# BAA89230), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250331 ID=CB250331; Name=CB250331; organism=Citrus sinensis; type=EST; length=464bp
ACTACTGCAGCAGCACCCTGCGAAAGGTGTCAACTCAGCATTCGGTTACA
AGGCAGAGTGGCAATCATTACTGGCGGAGCAAGCGGGATCGGAGCATCTG
CGGCTCAGCTTTTCCACAAAAATGGAGCCAAAGTTGTCATAGCCGATGTG
CAAGATAATCTTGGCCAAGCCCTAGCCGATAAGCTAGGCAACCAGGATGT
CTGCTACATCCATTGTGATGTATCAAATGAAAGGGAAGTCATCAATCTTG
TTGATACCACCGTTGCTAAATTCGGAAAGCTCGACATCCTGGTCAATACC
GGATGCAATCTTGAGTATCGTGGTTTCGTGAGCATTTTGGACACCCCAAA
GTCTGATCTAGAACATTTACTGGCTGTGAACACAATTGGTGGTTTCTTAG
TAGCCAAGCATGCTGCAAGAGTCATGGTGCCACGCCGCAGAGGTTGCATA
TTGTATACAACGGG
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