CB250335

Overview
NameCB250335
Unique NameCB250335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5764 contig Csv1_Contig5764:299..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.476e-35
Identity = 75/116 (64.66%), Postives = 82/116 (70.69%), Query Frame = 2
Query:   62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQGLPNMGSNAGA 409
            YGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ  VPPVAR                            NANPLDLFPQGLPN+G N GA
Sbjct:  174 YGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVAR--PPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGA 287          
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.141e-33
Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 2
Query:   41 ASMTVQ*YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQGLPNMGSNAGA 409
            AS+    YGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q  +PPVA+                            NANPL+LFPQG+P   + AGA
Sbjct:  128 ASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGA 250          
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.857e-26
Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 2
Query:   62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQGLPNMGSNA 403
            YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ  +P                                NA+PLDLFPQ LPN  ++A
Sbjct:  145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIP--VPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFPQALPNASTDA 256          
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.947e-23
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQ 376
            YGQAAS LV+GS++E  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE   +P                                N++PLDLFPQ
Sbjct:  133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPAT----------NLSGVGSGRELTAPPPSGGPNSSPLDLFPQ 227          
BLAST of CB250335 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 1.120e-22
Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = 2
Query:   62 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNANPLDLFPQ 376
            YGQAAS LV+GS+LE  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+  + AVP P A+                            N++PLDLFPQ
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQ------------IAGSGAAPVAPASGGPNSSPLDLFPQ 230          
The following BLAST results are available for this feature:
BLAST of CB250335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD23C_ARATH7.476e-3564.66Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH3.141e-3358.54Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ4.857e-2653.51Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH2.947e-2353.33Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH1.120e-2255.56Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionEST0124 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ184 similar to RAD23 protein (acc# CAB51544), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250335 ID=CB250335; Name=CB250335; organism=Citrus sinensis; type=EST; length=411bp
ACCGGTAATCATGTTCTTGATAAAGTCACGATGTCCGGGAGCATCAATGA
CGGTGCAGTAGTACGGCCAAGCTGCATCAAATCTTGTTGCAGGAAGTAAT
TTAGAAGCTACTGTCCAACAGATTCTTGATATGGGTGGAGGGAGTTGGGA
CCGAGAAACTGTTATTCGTGCTTTACGTGCTGCATATAACAACCCTGAAA
GAGCTGTTGAATATCTGTATTCTGGAATACCTGAGCAGACTGCAGTTCCA
CCTGTTGCTCGCGCTTCTGCTGGTGGGCAGGCAGGGAACCCGCCTGCCCA
AACTCAAGCTCAACAACCTGCAGCACCTGCACCTACCAGTGGTCCAAATG
CAAACCCGCTGGATCTTTTTCCTCAGGGCCTTCCAAATATGGGTTCGAAT
GCCGGTGCAGG
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