CB250338

Overview
NameCB250338
Unique NameCB250338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7137 contig Csv1_Contig7137:100..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CB250338 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 2.715e-66
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:    3 ARKSTGGKAPRKQLASKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMPKDIQLARRIRGERA 389
            ARKSTGGKAPRKQLA+KAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct:    8 ARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CB250338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_VITVI2.715e-6698.45Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC2.715e-6698.45Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS2.715e-6698.45Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ2.715e-6698.45Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI2.715e-6698.45Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO2.715e-6698.45Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA2.715e-6698.45Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE2.715e-6698.45Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU2.715e-6698.45Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI2.715e-6698.45Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionEST0127 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ190 similar to histone H3.3 (acc# NP_195713), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250338 ID=CB250338; Name=CB250338; organism=Citrus sinensis; type=EST; length=457bp
CTGCTCGCAAATCCACCGGCGGCAAGGCTCCCAGGAAGCAGCTCGCCAGT
AAGGCTGCTAGGAAGTCTGCACCTACCACTGGTGGAGTCAAGAAACCTCA
CCGTTACCGCCCAGGAACTGTTGCTCTTCGTGAAATTCGGAAGTATCAGA
AAAGCACTGAGCTTTTGATCCGTAAGCTGCCCTTCCAACGACTTGTTCGT
GAAATTGCTCAAGACTTCAAGACGGATTTGAGGTTCCAGAGCCACGCTGT
TCTTGCACTTCAGGAAGCTGCAGAGGCCTACCTTGTTGGTTTATTTGAAG
ATACAAATCTGTGTGCCATTCATGCCAGGAGGGTGACTATCATGCCAAAG
GACATTCAGCTTGCCAGGCGAATTCGTGGAGAAAGGGCGTAGTTTTGTGC
TTTGATTGTTGTTCATTAATTTCATTCTCATTTATTCTACATTCAGACTT
ATTCTGG
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