CB250339

Overview
NameCB250339
Unique NameCB250339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig117 contig Csv1_Contig117:1..478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.100e-31
Identity = 72/153 (47.06%), Postives = 100/153 (65.36%), Query Frame = 3
Query:   24 LMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYP--KDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            L+  YQ+PE+ R PL ELCLQIK+L LG I  FLS+ ++PP  EA+  +I  L E+ A++  EELTPLG HLA+LPV+  IGKM+LFG +F CL P+L+I+A LS+K PF+ P  K++  +  R +LA                T+SDHL ++
Sbjct:  615 LLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELA--------------KETRSDHLTVV 753          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 70/151 (46.36%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   24 LMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            L+  YQ+PE+ R PL ELCLQIK+L LG I  FLS+ ++PP  EA+  +I  L E+ A++  EELTPLG HLA+LPV+  IGKM+LFG +F CL P+L+I+A LS+K PF+ P  +++  +  +  L  D            T+SDHL ++
Sbjct:  622 LLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKD------------TRSDHLTVV 760          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.623e-30
Identity = 68/135 (50.37%), Postives = 95/135 (70.37%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404
            TR R+E  +  Y VPE+ R+PL ELCL I    LG  + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPFI P   K   + AK +L
Sbjct:  994 TRERFEGFL-DYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSL 1127          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.623e-30
Identity = 69/135 (51.11%), Postives = 95/135 (70.37%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404
            TR R+E  M  Y VPE+ R+PL ELCL I   +LG  + FLSKAL+PP+ + I+ A+++L ++GA E +E +LTPLG HLA LPV+V IGKM++FG IFGCL P+ +++A ++ KSPF  P   K   + AK AL
Sbjct:  995 TRERFEGFM-DYSVPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQLQVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSAL 1128          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.030e-29
Identity = 64/135 (47.41%), Postives = 92/135 (68.15%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398
            T H Y   +   Q+PE+QR+PL +LCL+IK+L   S   ++   S+ +EPP  +++  +   L ++GA+  DE LTPLG+HLA LPVDV IGK+MLFG IF CL P L+I+A L++KSPF+ P D+K+   + KL
Sbjct:  978 TSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSAHNLQSVFSRLIEPPHTDSLRASKIRLRDLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1112          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.030e-29
Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIE-GDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLAL 404
            TR R+E  M  Y VPE+ R+PL ELCL I    LG  + FLSKAL+PP+ + I+ A+S+L ++GA E    +LTPLG HLA LPV+V IGKM++FG IFGCL  + +++A ++ KSPF+ P  EK   + AK ++
Sbjct:  990 TRERFESFME-YSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMSLLRKIGACELSQPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDAVATLAATMTEKSPFVTPIGEKDRADLAKSSM 1123          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.675e-29
Identity = 63/135 (46.67%), Postives = 92/135 (68.15%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLL---SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKL 398
            T H Y   +   Q+PE+QR+PL +LCL+IK+L   S   ++   S+ +EPP  +++  +   L ++GA+  DE+LTPLG+HLA LPVDV IGK+ML G IF CL P L+I+A L++KSPF+ P D+K+   + KL
Sbjct:  980 TSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSVFSRLIEPPHIDSLRASKVRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKL 1114          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.904e-22
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 476
            +R R++ ++  +Q PE+ RMPL ELCL  KLL+     I  FL KA EPP    +  A+ +L  + A++  E+LT LG+HLA LPV+  +GKM+L   +  CL PIL+I+  L+Y+ PF+ P    Q     + A+L  K         + T SDH+ L+
Sbjct:  768 SRLRFQNMLE-FQTPELLRMPLQELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGTFSDHMALL 916          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.123e-21
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 3
Query:    3 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQ 377
            +R R++ ++  +Q PE+ RMPL ELCL  KLL+     I  FL KA EPP    +  A+ +L  + A++  E+LT LG+HLA LPV+  +GKM+L   +  CL PIL+I+  L+Y+ PF+ P    Q
Sbjct:  753 SRLRFQNMLE-FQTPELLRMPLQELCLHTKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQ 878          
BLAST of CB250339 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 8.738e-21
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3
Query:   33 PYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDK 416
            PY VPE++R+ L  L LQ+K +S+G  + F    +EPP   ++ TAI  L E GA++  E LTP+G  LA+LPVDV+IGKM++ G +F    P+L+I+A LS +SPF        +   A+  L +D+
Sbjct:  516 PYPVPEIRRVALDALVLQMKSMSVGDPRTF--PFIEPPPPASVETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQ 641          
The following BLAST results are available for this feature:
BLAST of CB250339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
DHX36_MOUSE1.100e-3147.06Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
DHX36_HUMAN1.437e-3146.36Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
DHX29_MOUSE4.623e-3050.37ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX29_HUMAN4.623e-3051.11ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
DHX57_HUMAN1.030e-2947.41Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX29_XENLA1.030e-2949.63ATP-dependent RNA helicase DHX29 OS=Xenopus laevis... [more]
DHX57_MOUSE6.675e-2946.67Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
YTDC2_MOUSE7.904e-2238.75Probable ATP-dependent RNA helicase YTHDC2 OS=Mus ... [more]
YTDC2_HUMAN5.123e-2142.52Probable ATP-dependent RNA helicase YTHDC2 OS=Homo... [more]
DHX34_MOUSE8.738e-2142.19Probable ATP-dependent RNA helicase DHX34 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionEST0128 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ191 similar to hypothetical Arabidopsis protein (acc# NP_176103), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250339 ID=CB250339; Name=CB250339; organism=Citrus sinensis; type=EST; length=478bp
GCACACGTCATAGGTATGAAAAGCTCATGCGTCCTTATCAGGTTCCTGAG
ATGCAGCGGATGCCTCTGGTTGAGTTGTGTTTACAAATTAAGTTACTTTC
TCTAGGACGCATAAAGATATTTCTATCCAAGGCGTTAGAACCTCCTAAGG
AAGAAGCTATTACTACTGCAATTTCAGTATTGTATGAGGTTGGTGCTATT
GAAGGGGATGAGGAATTGACCCCTCTTGGCCATCATTTGGCCAAACTTCC
TGTCGATGTATTGATTGGAAAGATGATGCTCTTTGGTGGAATATTTGGTT
GCTTATCTCCCATTCTCTCTATATCAGCTTTTCTTAGCTACAAATCACCA
TTTATTTATCCCAAGGATGAGAAGCAAAATGTTGAAAGAGCTAAATTGGC
TCTATTAACTGATAAGCTAGAGGGATTAAGTGATTCAAATGACAGTTCAA
CGCAATCTGACCATCTGGTATTGATGGT
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