CB250342

Overview
NameCB250342
Unique NameCB250342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB250342_ssr22 microsatellite CB250342_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig118 contig Csv1_Contig118:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 1.687e-99
Identity = 177/225 (78.67%), Postives = 201/225 (89.33%), Query Frame = 1
Query:    4 LCQHLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIYMGSPAVSCCSLSECGSERSL 678
            L +HLQR+RGSGLPWT+RLT+AT+TA+AIAYLHS+MNPPIYHRDIKS+NILLDY++ SKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQ FHLSDKSDVYSFGVVL EIIT LKVVDF+RPH+E+NLAALA+D+IG GC+DEIIDP L+   DAWTLSSIH VAELAFRCLAFH DMRPTM EVA+ELE IR+S W  ++ + SPA S  S S+ GSERS+
Sbjct:  429 LSEHLQRDRGSGLPWTLRLTVATQTAKAIAYLHSSMNPPIYHRDIKSTNILLDYDFNSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQCFHLSDKSDVYSFGVVLAEIITGLKVVDFTRPHTEINLAALAVDKIGSGCIDEIIDPILDLDLDAWTLSSIHTVAELAFRCLAFHSDMRPTMTEVADELEQIRLSGWIPSMSLDSPAGSLRS-SDRGSERSV 652          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLR_ARATH (Wall-associated receptor kinase-like 21 OS=Arabidopsis thaliana GN=WAKL21 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.454e-75
Identity = 139/206 (67.48%), Postives = 170/206 (82.52%), Query Frame = 1
Query:    4 LCQHLQRERGSG-LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMT---ESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWAS 609
            L QHLQ ERG   L W +RL IA +TA AIA+LHS++NPPIYHRDIKSSNILLD+ + SK++DFGLSRLGM+   E+SHISTAPQGTPGYLDPQYHQ F LSDKSDVYSFGVVL+EII+  KV+DF+RP+SEVNLA+LA+DRIGRG V +IIDP L    +    +SIHN+AELAFRCL+FHR+MRPTM+E+ E+L  I++  + +
Sbjct:  393 LYQHLQHERGQPPLSWQLRLAIACQTANAIAHLHSSVNPPIYHRDIKSSNILLDHEFNSKISDFGLSRLGMSTDFEASHISTAPQGTPGYLDPQYHQDFQLSDKSDVYSFGVVLVEIISGFKVIDFTRPYSEVNLASLAVDRIGRGRVVDIIDPCLNKEINPKMFASIHNLAELAFRCLSFHRNMRPTMVEITEDLHRIKLMHYGT 598          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 98/201 (48.76%), Postives = 136/201 (67.66%), Query Frame = 1
Query:   13 HLQRERGSGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNI 615
            H  +   S LPW+IRL IA ETA A+ YLH++    I HRD+KS+NILLD N+  KVADFGLSRL   + +H+STAPQGTPGY+DP YH  + LS+KSDVYSF VVL+E+I++L  VD +RP  E+NL+ +A+ +I    + +++DP L    D     ++  VAELAF+CL   +D+RP M  V + L  I+ + + S +
Sbjct:  431 HGPQANPSSLPWSIRLKIAVETASALKYLHASK---IIHRDVKSNNILLDQNFNVKVADFGLSRLFPMDKTHVSTAPQGTPGYVDPDYHLCYQLSNKSDVYSFAVVLMELISSLPAVDITRPRQEINLSNMAVVKIQNHELRDMVDPSLGFDTDTRVRQTVIAVAELAFQCLQSDKDLRPCMSHVQDTLTRIQNNGFGSEM 628          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 96/188 (51.06%), Postives = 127/188 (67.55%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRL-GMTES----SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHI 588
            L W  RL IA +TA+ +AYLHSA  PPIYHRD+KSSNILLD    +KV+DFGLSRL  +TE+    SHI T  QGT GYLDP+Y++ F L+DKSDVYSFGVVL+E++T+ K +DF+R   +VNL       + +  + E IDP L+   +   + +I  +  LA  CL   R  RP+M EVA+E+E+I
Sbjct:  459 LTWRRRLQIAYQTAEGLAYLHSAAQPPIYHRDVKSSNILLDEKLNAKVSDFGLSRLVDLTETANNESHIFTGAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLEMVTSKKAIDFTREEEDVNLVMYINKMMDQERLTECIDPLLKKTANKIDMQTIQQLGNLASACLNERRQNRPSMKEVADEIEYI 646          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.187e-44
Identity = 96/201 (47.76%), Postives = 128/201 (63.68%), Query Frame = 1
Query:    4 LCQHLQRERGSG------LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHI 588
            L +H+    G G      LP   RL IA +TAQ + YLHS+ +PPIYHRD+KSSNILLD N   KVADFGLSRLG+++ SH++T  QGT GYLDP+Y+  F L+DKSDVYSFGVVL E++T  K +DF+R   +VNL       +  G + ++IDP +        + S+  +  LA  C+   R  RPTM   A+E+E+I
Sbjct:  435 LFEHIYGGGGGGGGLYDHLPLRRRLMIAHQTAQGLDYLHSSSSPPIYHRDVKSSNILLDENLDVKVADFGLSRLGVSDVSHVTTCAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVLFELLTCKKAIDFNREEEDVNLVVFVRKALKEGRLMDVIDPVIGIGATEKEIESMKALGVLAELCVKETRQCRPTMQVAAKEIENI 635          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 86/186 (46.24%), Postives = 118/186 (63.44%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 597
            + W +RL I+ E A A+AYLHSA + P+YHRD+K++NILLD  YR+KV+DFG SR    + +H++T   GT GYLDP+Y Q    +DKSDVYSFGVVL+E+IT  K     RP     L +   + + +  V +I+D  +   ++  TL  +  VA+LA RCL+     RP M EV+ ELE IR S
Sbjct:  515 MTWDVRLRISVEIAGALAYLHSAASTPVYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTHLTTLVAGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELITGEKPFSVMRPEENRGLVSHFNEAMKQNRVLDIVDSRI---KEGCTLEQVLAVAKLARRCLSLKGKKRPNMREVSVELERIRSS 697          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 88/195 (45.13%), Postives = 131/195 (67.18%), Query Frame = 1
Query:    4 LCQHLQRERG-SGLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSR-LGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELE 582
            L QHL  ERG S L W+ RL I  ETAQ + YLH+   PP+ HRD+K++NILLD ++++K+ADFGLSR   +   +H+STA  GTPGYLDP+Y++   L++KSDVYSFG+VL+EIIT+  V+  +R   + ++AA     + +G ++ ++DP L  +RD +  +S+    E+A  C+    + RPTM +V  EL+
Sbjct:  654 LKQHLSGERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGETHVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQTR--EKPHIAAWVGYMLTKGDIENVVDPRL--NRD-YEPTSVWKALEIAMSCVNPSSEKRPTMSQVTNELK 843          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 93/226 (41.15%), Postives = 131/226 (57.96%), Query Frame = 1
Query:    4 LCQHLQRERGSGL--PWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIYMGSPAVSCCSLSECGSERS 675
            L +HL  E    +   W IRL IA + A A++YLHS+ + PIYHRD+KS+NI+LD  YR+KV+DFG SR    + +H++T   GT GY+DP+Y Q    +DKSDVYSFGVVL+E+IT  K + F R      LA   I  +    + +IID  +   RD   LS +   A++A +CL      RP+M EV+ EL+ IR+      +        C S +E G E++
Sbjct:  528 LFEHLHDEFDENIMATWNIRLRIAIDIAGALSYLHSSASSPIYHRDVKSTNIMLDEKYRAKVSDFGTSRTVTVDHTHLTTVVSGTVGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGEKSISFLRSQENRTLATYFILAMKENKLFDIIDARI---RDGCMLSQVTATAKVARKCLNLKGRKRPSMREVSMELDSIRMPCGDMQLQ------ECVSENEEGEEQN 744          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLG_ARATH (Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 82/184 (44.57%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   40 LPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIR 591
            + W +RL IA E A A++YLHSA++ PIYHRD+KS+NILLD  +R+KV+DFG+SR    + +H++T  QGT GY+DP+Y Q  H + KSDVYSFGV+LIE++T  K V   R      L A  ++ +    + EI+D  ++   D      +  VA+LA RCL+ + + RPTM +V  EL+ ++
Sbjct:  484 MSWEVRLCIACEVADALSYLHSAVSIPIYHRDVKSTNILLDEKHRAKVSDFGISRSVAIDDTHLTTIVQGTIGYVDPEYLQSNHFTGKSDVYSFGVLLIELLTGEKPVSLLRRQEVRMLGAYFLEAMRNDRLHEILDARIKEECDR---EEVLAVAKLARRCLSLNSEHRPTMRDVFIELDRMQ 664          
BLAST of CB250342 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 90/207 (43.48%), Postives = 125/207 (60.39%), Query Frame = 1
Query:    4 LCQHLQRERGS-GLPWTIRLTIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIYM 621
            LC+ L  E     + W +RL IA E A A++YLHSA + PIYHRDIK++NILLD   R+KV+DFG SR    + +H++T   GT GY+DP+Y Q    ++KSDVYSFGVVL+E++T  K     R      LAA  ++ +    V +I+D  +   +D   +  + +VA LA RCL      RP M EV+ ELE IR S + S I++
Sbjct:  497 LCKRLHDESDDYTMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDERNRAKVSDFGTSRSVTIDQTHLTTQVAGTFGYVDPEYFQSSKFTEKSDVYSFGVVLVELLTGEKPSSRVRSEENRGLAAHFVEAVKENRVLDIVDDRI---KDECNMDQVMSVANLARRCLNRKGKKRPNMREVSIELEMIRSSHYDSGIHI 700          
The following BLAST results are available for this feature:
BLAST of CB250342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 304
Match NameE-valueIdentityDescription
WAKLO_ARATH1.687e-9978.67Wall-associated receptor kinase-like 14 OS=Arabido... [more]
WAKLR_ARATH6.454e-7567.48Wall-associated receptor kinase-like 21 OS=Arabido... [more]
Y1839_ARATH3.019e-4848.76Probable serine/threonine-protein kinase At1g18390... [more]
WAKLQ_ARATH5.329e-4551.06Wall-associated receptor kinase-like 20 OS=Arabido... [more]
WAKLP_ARATH1.187e-4447.76Wall-associated receptor kinase-like 15 OS=Arabido... [more]
WAKLI_ARATH5.707e-3946.24Wall-associated receptor kinase-like 22 OS=Arabido... [more]
Y2289_ARATH9.734e-3945.13Probable LRR receptor-like serine/threonine-protei... [more]
WAKLH_ARATH9.734e-3941.15Wall-associated receptor kinase-like 9 OS=Arabidop... [more]
WAKLG_ARATH1.836e-3744.57Wall-associated receptor kinase-like 8 OS=Arabidop... [more]
WAKLB_ARATH2.398e-3743.48Wall-associated receptor kinase-like 2 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionEST0132 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ196 similar to putative protein kinase (acc# AAL91622), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250342 ID=CB250342; Name=CB250342; organism=Citrus sinensis; type=EST; length=705bp
GCTCTGTGTCAGCATCTGCAAAGAGAGAGAGGAAGTGGACTTCCTTGGAC
AATACGGCTTACCATAGCCACTGAGACTGCTCAAGCAATTGCCTATCTTC
ACTCAGCTATGAATCCACCAATTTACCACCGAGACATCAAATCCAGCAAT
ATACTATTGGATTACAACTATAGGTCAAAGGTAGCGGATTTTGGGCTTTC
CAGACTTGGCATGACTGAGTCATCCCACATCTCAACTGCTCCACAAGGAA
CTCCAGGCTACCTTGATCCTCAATACCATCAGTATTTCCATCTTTCTGAC
AAAAGTGATGTTTACAGTTTTGGGGTAGTTCTTATTGAGATCATAACTGC
ACTGAAAGTGGTTGATTTTTCTCGCCCTCACAGTGAGGTGAATTTGGCTG
CACTTGCTATTGATAGGATTGGAAGAGGTTGTGTGGATGAGATAATAGAT
CCATACCTTGAGCCACATAGGGATGCGTGGACACTCTCATCCATTCACAA
TGTTGCTGAGCTAGCATTTAGATGCCTTGCGTTTCATAGGGACATGAGGC
CTACTATGATGGAAGTGGCAGAAGAGCTAGAACACATCAGGGTCAGTTCA
TGGGCTTCAAATATTTATATGGGCTCACCCGCAGTGTCTTGTTGTTCATT
ATCGGAATGCGGAAGTGAGAGATCACTGAGTGGCTTGACAGTTAAGAAGG
CAGGG
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