CB250344

Overview
NameCB250344
Unique NameCB250344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length289
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 1.330e-47
Identity = 90/96 (93.75%), Postives = 94/96 (97.92%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NF+QSRSLRRAQDVRKQLLS MDKYKLDV++AGKNFTKIRKAITAGFFFH ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYH+LVMTTKE
Sbjct: 1015 NFIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKE 1110          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.333e-39
Identity = 74/96 (77.08%), Postives = 88/96 (91.67%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NFVQ+RSLRRAQDVRKQL++ MD+YKLD++SAG+N+TKI+KAI +GFF +A++KDP EGY+TLVE QPVYIHPSS LF R PDWVIYHELVMTTKE
Sbjct: 1008 NFVQARSLRRAQDVRKQLITIMDRYKLDIISAGRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNPDWVIYHELVMTTKE 1103          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.074e-36
Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NF+Q+RSLRRAQD+RKQ+L  MD++KLDV+S GK+  +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKE
Sbjct: 1089 NFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE 1184          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.074e-36
Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NF+Q+RSLRRAQD+RKQ+L  MD++KLDV+S GK+  +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKE
Sbjct: 1065 NFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE 1160          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.154e-33
Identity = 62/96 (64.58%), Postives = 84/96 (87.50%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NF+Q RS++RAQD+RKQLL  MD++KL ++S G++ ++++KAI +GFF +AA++DPQEGYRTL + Q VYIHPSSA FQ+QP+WV+YHELVMTTKE
Sbjct: 1040 NFIQVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKE 1135          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.699e-24
Identity = 50/96 (52.08%), Postives = 76/96 (79.17%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NFVQ RS+RRA+DVR+QL   +++ ++ + S   ++ ++RKAITAG+F+H AR   + GYRT+ + Q V+IHP+S+LF++QP W++YHELV+TTKE
Sbjct:  904 NFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKE 998          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.699e-24
Identity = 50/96 (52.08%), Postives = 76/96 (79.17%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NFVQ RS+RRA+DVR+QL   +++ ++ + S   ++ ++RKAITAG+F+H AR   + GYRT+ + Q V+IHP+S+LF++QP W++YHELV+TTKE
Sbjct:  901 NFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKE 995          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.026e-23
Identity = 48/97 (49.48%), Postives = 73/97 (75.26%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEG-YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            +++Q+R +RRA+DVRKQL+  MD+Y+  V+S G+    I +A+ +G+F + A++D  EG Y+T+VEN PVY+HPS  LF +  +WVIYHEL+ T+KE
Sbjct: 1011 HYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKE 1107          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.222e-21
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NF+Q RS++RAQDVR QL   +++ ++ ++S   +   IRK I +GFF+++A+ +    +RT   NQ V IHPSS LFQ  P WV+YHELV+TTKE
Sbjct:  968 NFIQHRSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIRKCIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKE 1063          
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.775e-18
Identity = 47/98 (47.96%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 NFVQSRSLRRAQDVRKQLLSTMDKYKLD-VMSAGKNFTKIRKAITAGFFFHAARKDPQ-EGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289
            NF+Q +SL RA+DVR QL +  ++ +++ V ++ ++   I+KAITAG+F +AAR D   + YRT+  NQ VYIHPSS++ +++P  +IY ELV+TTKE
Sbjct:  920 NFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKE 1017          
The following BLAST results are available for this feature:
BLAST of CB250344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHX8_ARATH1.330e-4793.75Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_DICDI1.333e-3977.08ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
DHX8_MOUSE3.074e-3669.79ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN3.074e-3669.79ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
MOG5_CAEEL4.154e-3364.58Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_PANTR2.699e-2452.08Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN2.699e-2452.08Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_SCHPO1.026e-2349.48Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_DICDI6.222e-2148.96Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
CDC28_SCHPO3.775e-1847.96Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]

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Properties
Property NameValue
Genbank descriptionEST0134 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ198 similar to ATP-dependent RNA helicase (acc# NP_189288), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250344 ID=CB250344; Name=CB250344; organism=Citrus sinensis; type=EST; length=289bp
GAACTTTGTTCAGTCTCGATCCTTGAGGAGGGCACAGGATGTCAGAAAAC
AACTTCTCAGCACTATGGATAAATATAAGTTGGATGTTATGAGTGCTGGA
AAGAATTTCACGAAGATAAGGAAGGCAATTACAGCAGGATTCTTTTTTCA
TGCTGCTAGAAAGGACCCACAGGAGGGCTATCGGACCTTAGTTGAGAATC
AGCCGGTTTATATCCACCCAAGCAGTGCACTATTTCAGAGACAACCTGAT
TGGGTCATCTACCATGAGCTCGTCATGACTACTAAGGAG
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