CB250344
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 1.330e-47 Identity = 90/96 (93.75%), Postives = 94/96 (97.92%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NF+QSRSLRRAQDVRKQLLS MDKYKLDV++AGKNFTKIRKAITAGFFFH ARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYH+LVMTTKE Sbjct: 1015 NFIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKE 1110
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.333e-39 Identity = 74/96 (77.08%), Postives = 88/96 (91.67%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NFVQ+RSLRRAQDVRKQL++ MD+YKLD++SAG+N+TKI+KAI +GFF +A++KDP EGY+TLVE QPVYIHPSS LF R PDWVIYHELVMTTKE Sbjct: 1008 NFVQARSLRRAQDVRKQLITIMDRYKLDIISAGRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNPDWVIYHELVMTTKE 1103
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 3.074e-36 Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NF+Q+RSLRRAQD+RKQ+L MD++KLDV+S GK+ +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKE Sbjct: 1089 NFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE 1184
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 3.074e-36 Identity = 67/96 (69.79%), Postives = 86/96 (89.58%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NF+Q+RSLRRAQD+RKQ+L MD++KLDV+S GK+ +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQP+WV+YHELV+TTKE Sbjct: 1065 NFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE 1160
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.154e-33 Identity = 62/96 (64.58%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NF+Q RS++RAQD+RKQLL MD++KL ++S G++ ++++KAI +GFF +AA++DPQEGYRTL + Q VYIHPSSA FQ+QP+WV+YHELVMTTKE Sbjct: 1040 NFIQVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKE 1135
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.699e-24 Identity = 50/96 (52.08%), Postives = 76/96 (79.17%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NFVQ RS+RRA+DVR+QL +++ ++ + S ++ ++RKAITAG+F+H AR + GYRT+ + Q V+IHP+S+LF++QP W++YHELV+TTKE Sbjct: 904 NFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKE 998
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 2.699e-24 Identity = 50/96 (52.08%), Postives = 76/96 (79.17%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NFVQ RS+RRA+DVR+QL +++ ++ + S ++ ++RKAITAG+F+H AR + GYRT+ + Q V+IHP+S+LF++QP W++YHELV+TTKE Sbjct: 901 NFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLT-RSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKE 995
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.026e-23 Identity = 48/97 (49.48%), Postives = 73/97 (75.26%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEG-YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 +++Q+R +RRA+DVRKQL+ MD+Y+ V+S G+ I +A+ +G+F + A++D EG Y+T+VEN PVY+HPS LF + +WVIYHEL+ T+KE Sbjct: 1011 HYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKE 1107
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.222e-21 Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLDVMSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NF+Q RS++RAQDVR QL +++ ++ ++S + IRK I +GFF+++A+ + +RT NQ V IHPSS LFQ P WV+YHELV+TTKE Sbjct: 968 NFIQHRSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIRKCIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKE 1063
BLAST of CB250344 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 3.775e-18 Identity = 47/98 (47.96%), Postives = 72/98 (73.47%), Query Frame = 2 Query: 2 NFVQSRSLRRAQDVRKQLLSTMDKYKLD-VMSAGKNFTKIRKAITAGFFFHAARKDPQ-EGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 289 NF+Q +SL RA+DVR QL + ++ +++ V ++ ++ I+KAITAG+F +AAR D + YRT+ NQ VYIHPSS++ +++P +IY ELV+TTKE Sbjct: 920 NFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKE 1017 The following BLAST results are available for this feature:
BLAST of CB250344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250344 ID=CB250344; Name=CB250344; organism=Citrus sinensis; type=EST; length=289bpback to top |