CB250346

Overview
NameCB250346
Unique NameCB250346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12005 contig Csv1_Contig12005:629..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.260e-38
Identity = 76/108 (70.37%), Postives = 91/108 (84.26%), Query Frame = 1
Query:    1 TANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEA 324
            T N++AEF DL++AS+AARA+KNPFRNL  ++NRPQLVIGA+G+PAFQQLTGMNSILFYAPV+FQSLGFG  A+L SS IT  AL +AA++SM   DKFGRR   LEA
Sbjct:  250 TNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEA 357          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STA_RICCO (Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.118e-29
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 TANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 306
            T +VDAEF D++DAS  A +IK+PFRN+ +K+NRPQLV+ A+ +P FQ LTG+N ILFYAP +FQS+GFG  AALYSS +TG  LC +  IS+A VD+ GRR
Sbjct:  250 TKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVM-AIFMPTFQILTGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRR 350          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 60/108 (55.56%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 TANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEA 324
            T NV+ EF+DL++AS  A+ +K+PFRNL +++NRPQLVI A+ +  FQQ TG+N+I+FYAPV+F +LGFGS A+LYS+V+TG    ++ L+S+  VDK GRR   LEA
Sbjct:  249 TDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI-AVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEA 355          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.793e-28
Identity = 59/106 (55.66%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 TANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL 318
            T NV+AE  D++DAS  A +IK+PFRN+ +K++RPQLV+ A+ +P FQ LTG+NSILFYAPV+FQ++GFG  A+LYSS +TG  L ++  IS+  VD+ GRRA  +
Sbjct:  250 TENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVM-AICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLI 354          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.421e-25
Identity = 55/105 (52.38%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    7 NVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 321
            NVD EF DLIDA  AA+ ++NP++N+ + K RP L+  +  IP FQQ+TG+N I+FYAPV+F++LGFG  AAL S+VITG+   ++  +S+  VD++GRR  FLE
Sbjct:  251 NVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS-AIPFFQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLE 354          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.423e-25
Identity = 57/105 (54.29%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    7 NVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 321
            ++D E +DLI AS A++ +++P+RNL ++K RP L +  L IPAFQQLTG+N I+FYAPV+FQ++GFGS AAL S+V+TG+    A ++S+  VDK+GRR  FLE
Sbjct:  248 DIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAIL-IPAFQQLTGINVIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLE 351          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.165e-25
Identity = 56/105 (53.33%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    7 NVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 321
            +VD EF+DL+ AS  ++ +++P+RNL ++K RP L + A+ IP FQQLTG+N I+FYAPV+F ++GFGS AAL S+VITG+    A ++S+  VDK+GRR  FLE
Sbjct:  252 DVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSM-AIAIPFFQQLTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLE 355          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.209e-25
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 TANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 321
            T  VD EF DLIDAS  ++ +K+P++N+   + RPQL++    IP FQQLTG+N I FYAPV+FQ+LGFGS A+L S+++TGI   +   +S+  VD+FGRR  FL+
Sbjct:  247 TNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCF-IPFFQQLTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQ 352          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.018e-23
Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 TANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL 318
            T +V AE  DLI AS  +R I++PF+N+ ++K RPQLV+ A+ IP FQQ+TG+N I FYAP++F+++G    A+L SS++TG+    +  ISM  VDK GRRA F+
Sbjct:  248 TTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVM-AVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFI 352          
BLAST of CB250346 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.330e-23
Identity = 55/106 (51.89%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    7 NVDAEFSDLIDASNAARAIKNPFRNLFKK-KNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLE 321
            NVD EF DL DA  AA+ + NP++N+F++ K RP LV  +  IP FQQ+TG+N I+FYAPV+F++LGF   A+L S+VITG    ++ L+S+  VD++GRR  FLE
Sbjct:  251 NVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCS-AIPFFQQITGINVIMFYAPVLFKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLE 355          
The following BLAST results are available for this feature:
BLAST of CB250346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
STP14_ARATH3.260e-3870.37Sugar transport protein 14 OS=Arabidopsis thaliana... [more]
STA_RICCO2.118e-2960.78Sugar carrier protein A OS=Ricinus communis GN=STA... [more]
STP13_ARATH1.373e-2855.56Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP7_ARATH1.793e-2855.66Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
STP10_ARATH1.421e-2552.38Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP12_ARATH2.423e-2554.29Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
STC_RICCO3.165e-2553.33Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
STP4_ARATH9.209e-2551.40Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
HEX6_RICCO1.018e-2350.00Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STP9_ARATH1.330e-2351.89Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionEST0136 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ201 similar to sugar carrier protein (acc# NP_177845), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250346 ID=CB250346; Name=CB250346; organism=Citrus sinensis; type=EST; length=326bp
ACCGCAAATGTTGACGCAGAGTTTTCGGATCTTATCGATGCAAGCAATGC
AGCACGGGCCATCAAGAATCCTTTCAGGAATCTTTTCAAAAAGAAAAATC
GCCCTCAATTGGTAATTGGAGCCCTGGGAATCCCAGCTTTCCAACAGCTA
ACAGGAATGAACTCTATTCTCTTTTATGCTCCTGTCATATTCCAGAGTTT
GGGTTTTGGTTCAGGTGCAGCTCTCTACTCGTCTGTCATTACTGGCATAG
CCCTTTGCATTGCTGCACTTATTTCAATGGCTTTTGTGGACAAATTTGGA
AGAAGAGCTTTCTTCTTAGAAGCTGG
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