CB250362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_PONAB (Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.331e-19 Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 3 Query: 282 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQE 482 FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F FT T+K +F + E E Sbjct: 485 FPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVE 551
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_HUMAN (Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.331e-19 Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 3 Query: 282 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQE 482 FPDEVDTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F FT T+K +F + E E Sbjct: 484 FPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEKEVE 550
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_MOUSE (Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18 Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 3 Query: 282 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQE 482 FPDE+DTP DV AR RF KYRGLKSFRTS WDPKE+LP +YARIF F F T+K +F + E E Sbjct: 483 FPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFKEIEEKEAE 549
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_DROME (Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.921e-18 Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 3 Query: 282 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKME 476 +PDE+DTPLDVPAR+RF KYRGL+SFRTS WD KE+LP +YARI+ F F RT++ + A + E Sbjct: 489 WPDEIDTPLDVPARERFQKYRGLESFRTSPWDAKENLPADYARIYQFQNFDRTKRRILNEAKEFE 553
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_CAEEL (Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans GN=tag-151 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17 Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 3 Query: 282 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFA 458 +PDEVDTP+D+PAR F KYRGLKSFRTS+WDPKE+LP +YARIF F + T+K+V + Sbjct: 451 WPDEVDTPMDMPARIAFQKYRGLKSFRTSTWDPKENLPLDYARIFQFANYRNTKKNVMS 509
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_CAEBR (Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae GN=tag-151 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17 Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 3 Query: 282 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFA 458 +PDEVDTP+D PAR RF KYRGLKSFRTS+WD KE+LP +YARIF F + T+K+V + Sbjct: 454 WPDEVDTPIDQPARIRFQKYRGLKSFRTSTWDAKENLPVDYARIFQFANYKNTKKNVMS 512
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_XENLA (Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17 Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 282 FPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVF 455 FPDEVDTP D AR RF KYRGLKSFRTS WD KE+LP +YARIF F F RT+K VF Sbjct: 496 FPDEVDTPRDQIARIRFQKYRGLKSFRTSPWDVKENLPRDYARIFQFHDFFRTRKRVF 553
BLAST of CB250362 vs. ExPASy Swiss-Prot
Match: TSR1_DICDI (Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum GN=tsr1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14 Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 123 NSDIDDDQASLNFRYADDGTENDSVMMEGEILTRXXXXXXXXXXXXXXXXXXXFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQK 446 +SD +DD + + D+ + + + EIL +PDEVDTP +VP+R RF+K+RGLKSFR+S WD KE+LP +YA+IF F F ++ + Sbjct: 490 DSDDEDDDENKEEQSEDEDEDERKQLQQDEIL---------------------YPDEVDTPGNVPSRIRFSKFRGLKSFRSSPWDVKENLPIDYAKIFQFHSFNQSMR 576 The following BLAST results are available for this feature:
BLAST of CB250362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB250362 ID=CB250362; Name=CB250362; organism=Citrus sinensis; type=EST; length=488bpback to top |