CB250364

Overview
NameCB250364
Unique NameCB250364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1266 contig Csv1_Contig1266:338..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.389e-37
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = -1
Query:  233 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 484
            F ASLPAD+CRY +Y+FDFVT ENCQKSKI FIAWSPDT+KVR KMIYASSKDRFKRELDGIQVELQATDPTEMGLDV +SRTN
Sbjct:   54 FAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 6.893e-37
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = -1
Query:  233 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 484
            F ASLPA+ECRYA++++DFVT+ENCQKSKI FIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVELQATDPTE+GLDV+R R N
Sbjct:   56 FAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.536e-36
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = -1
Query:  233 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 484
            F ASLPADECRYA+Y+FDFVT ENCQKSKI FIAW PD +KVRSKMIYASSKDRFKRELDGIQVELQATDPTEM LDV++SR N
Sbjct:   56 FAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.835e-36
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = -1
Query:  233 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 484
            F A LPADECRYA+Y+FDFVT ENCQKSKI FIAW PD +KVRSKMIYASSKDRFKRELDGIQVELQATDPTEM LDV RSR N
Sbjct:   56 FAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.621e-36
Identity = 68/82 (82.93%), Postives = 79/82 (96.34%), Query Frame = -1
Query:  239 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 484
            FTAS+PA ECRYAV++FDFVTDENCQKSKI FI+WSPDTSKVRSKM+YASSKDRFKRELDGIQVELQATDP+EM +D++++R
Sbjct:   56 FTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKAR 137          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.621e-36
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = -1
Query:  239 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 484
            FTA LPADECRYAVY+FDF+T EN QKS+I FIAWSPDT++VRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDV RSR
Sbjct:   56 FTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSR 137          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.621e-36
Identity = 68/82 (82.93%), Postives = 79/82 (96.34%), Query Frame = -1
Query:  239 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 484
            FTA LPADECRYAV++FDFVTDENCQKSKI FI+W+PDTS+VRSKM+YASSKDRFKRELDGIQVELQATDP+EM +D+++SR
Sbjct:   56 FTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSR 137          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 67/82 (81.71%), Postives = 78/82 (95.12%), Query Frame = -1
Query:  239 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 484
            FTASLPA+ECRYAV++FDF+TDENCQKSKI FIAWSPD+S+VR KM+YASSKDRFKRELDGIQVELQATDP+EM  D+++SR
Sbjct:   54 FTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSR 135          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = -1
Query:  233 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 484
            F ASLP +ECRYAVY+FDFVT ENCQKS+I FIAW PDT++VRSKMIYASSKDRFKRELDGIQVELQA DPTEMGLDV++SR N
Sbjct:   56 FAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CB250364 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.940e-35
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = -1
Query:  233 FTASLPADECRYAVYNFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 484
            FT S+P DECRYAVY++DF T ENCQKSKI FIAWSPDTS+VRSKM+YASSKDRFKRELDGIQVELQATDP+EM LD+++ R N
Sbjct:   56 FTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
The following BLAST results are available for this feature:
BLAST of CB250364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ADF2_ARATH1.389e-3786.90Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF7_ORYSJ6.893e-3784.52Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF4_ARATH1.536e-3685.71Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF1_ARATH5.835e-3685.71Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF6_ORYSJ7.621e-3682.93Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF2_PETHY7.621e-3687.80Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_ORYSJ7.621e-3682.93Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF7_ARATH2.896e-3581.71Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF1_PETHY2.896e-3583.33Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF10_ARATH4.940e-3579.76Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionEST0158 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ230 similar to actin depolymerizing factor 2 (acc# T47540), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250364 ID=CB250364; Name=CB250364; organism=Citrus sinensis; type=EST; length=484bp
ACCCCCCACAAACCATTATATATTAGTCTGTAATTATCATCACACCATAT
GGGGATACTCACCCTATTAATCCACAGATATAACAAATGAGAAGACAACT
TAAAAAAGTATTTAACTCCGACCACAAGCTGATAGCAAAGCAAGTTATAA
GTCATAAAAGATATAGACATTACATTTAAGTGAACAATATAGTATGGGCT
TTCCATTGCACCATAGGCAAGTCTAAAATTTAATTTGTGCGGCTTCTCAT
GACATCAAGACCCATCTCAGTAGGATCAGTAGCCTGCAACTCTACCTGAA
TTCCATCCAATTCTCTCTTGAACCTGTCCTTGGAGCTAGCATAAATCATC
TTGCTTCTCACCTTTGAGGTGTCGGGGGACCATGCAATGAAAATAATCTT
GCTCTTCTGGCAGTTCTCATCAGTCACAAAGTCAAAATTGTAGACAGCGT
ATCGGCACTCATCCGCTGGGAGGCTAGCAGTGAA
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