CB250371

Overview
NameCB250371
Unique NameCB250371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:281..1003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250371 vs. ExPASy Swiss-Prot
Match: GLTR_ARATH (Uncharacterized glycosyltransferase At3g02350 OS=Arabidopsis thaliana GN=At3g02350 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.493e-42
Identity = 91/201 (45.27%), Postives = 127/201 (63.18%), Query Frame = 2
Query:    2 VVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGK-AIIQIQSIDNFNWLSTKYNATLKK-------------------ENSHD-----PRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQRDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLT 529
            VVV S V  A+EP K VFHVVTD +NL A+ +WF + P  + A ++I+S+++F +L++ Y   L++                   ++SH+     P+Y S LNHLRFYLP+++P LNK+L  D DVVVQ+D+  LW I++ GKV GAV+TC     SF R   ++NFS PLI + F+  AC WAFGMN+FDL  WR+ K T
Sbjct:  264 VVVRSVVMNAEEPWKHVFHVVTDRMNLAAMKVWFKMRPLDRGAHVEIKSVEDFKFLNSSYAPVLRQLESAKLQKFYFENQAENATKDSHNLKFKNPKYLSMLNHLRFYLPEMYPKLNKILFLDDDVVVQKDVTGLWKINLDGKVNGAVETC---FGSFHRYGQYLNFSHPLIKENFNPSACAWAFGMNIFDLNAWRREKCT 461          
BLAST of CB250371 vs. ExPASy Swiss-Prot
Match: QUA1_ARATH (Glycosyltransferase QUASIMODO1 OS=Arabidopsis thaliana GN=QUA1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 91/200 (45.50%), Postives = 123/200 (61.50%), Query Frame = 2
Query:    2 VVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKAIIQIQSIDNFNWLSTKYNATLKKENS------------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQRDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLT 529
            VVVNS V  AKEP K VFHVVTD +NL A+ + F L     A +++++++++ +L++ Y   LK+  S                         +P+Y S LNHLRFYLP+++P L+++L  D DVVVQ+DL  LW IDM GKV GAV+TC     SF R   ++NFS PLI +KF+ KAC WA+GMN FDL  WR+ K T
Sbjct:  263 VVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAVETC---FGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCT 459          
The following BLAST results are available for this feature:
BLAST of CB250371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GLTR_ARATH1.493e-4245.27Uncharacterized glycosyltransferase At3g02350 OS=A... [more]
QUA1_ARATH1.949e-4245.50Glycosyltransferase QUASIMODO1 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionEST0169 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ244 similar to expressed Arabidopsis protein (acc# NP_671901), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250371 ID=CB250371; Name=CB250371; organism=Citrus sinensis; type=EST; length=723bp
TGTGGTTGTTAATTCCACAGTCTCTTTTGCAAAGGAACCAGAGAAAATTG
TATTTCATGTGGTGACTGATTCTCTAAACCTCCCAGCAATCTCCATGTGG
TTCTTACTCAATCCTCCTGGCAAAGCAATTATCCAGATCCAGAGCATAGA
CAATTTCAATTGGCTGTCCACCAAGTATAATGCAACATTGAAGAAGGAAA
ACTCCCACGACCCAAGATATACTTCCGCCCTGAACCACCTTCGGTTTTAC
CTGCCGGATGTCTTCCCTGCATTGAATAAGGTTCTACTCTTTGACCATGA
TGTTGTGGTGCAGAGGGATCTAGGCAGACTTTGGAATATTGATATGAAAG
GGAAAGTAATTGGAGCAGTGGATACTTGCAAGGAAAGTGAAGCCTCTTTT
CGCCGGATGGATTTGTTTATAAACTTTTCAGATCCATTGATCGCAAAGAA
GTTTGATGTCAAGGCTTGCACTTGGGCATTTGGGATGAATTTGTTTGATC
TGCAAGAGTGGAGGAAAAGAAAACTAACTGCAGTGTGCGAGCGGCAGCCG
ATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTCTCAAAGCTCTTCA
GGTAAGAATGGCGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGC
CTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAG
GTCAATGACATCTCGTTGAGTGA
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