CB250377

Overview
NameCB250377
Unique NameCB250377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1268 contig Csv1_Contig1268:73..377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.331e-33
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   25 KNMGRFGLCV-ILSLCLLVATASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 303
            + +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+
Sbjct:    2 ERVNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNT 95          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.331e-33
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   25 KNMGRFGLCV-ILSLCLLVATASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 303
            + +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+
Sbjct:    2 ERVNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNT 95          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.452e-30
Identity = 57/87 (65.52%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   46 LCVILSLC-LLVATASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 303
            LCV   +  +++A A+AQSA+NVRATYHLY+P+ I WDL  AS +CATWDA KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+
Sbjct:    7 LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNT 93          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.164e-28
Identity = 57/87 (65.52%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   46 LCVILSLCLLVATASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTN 300
            + V   LC   A A+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   G  GQAACG+CLRVTN
Sbjct:    8 MLVAALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTN 94          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27
Identity = 55/87 (63.22%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   46 LCVILSLCLLVATASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTN 300
            + V+  LC   A A+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   G  GQA+CG+CL+VTN
Sbjct:    6 MLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTN 92          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.739e-27
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   97 SASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 303
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDA+KPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+
Sbjct:   79 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNT 147          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.170e-26
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   97 SASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 303
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDA+KP AWR KYGWTAFC   GP G+ +CG+CLRVTN+
Sbjct:   78 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNT 146          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.833e-26
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   94 QSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 303
            +SASNVRATYH Y+P Q  WDL A SA+C+TWDA KP AWR KYGWTAFC   GP GQA+CG+CLRV N+
Sbjct:   72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNT 141          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.837e-25
Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   94 QSASNVRATYHLYHPEQIGWDL--TAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTN 300
            Q A++VRATYH Y P Q  WDL   A SA+CATWDASKPL+WR KYGWTAFC   GP GQAACG+CLRVTN
Sbjct:    1 QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTN 71          
BLAST of CB250377 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.908e-24
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   97 SASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 303
            SASNV ATYHLY+ +  GWDL AASA+C+TWDA+KP +WR KYGWTAFC   G  GQ++CG+CL VTN+
Sbjct:   69 SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNT 137          
The following BLAST results are available for this feature:
BLAST of CB250377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4B_TOBAC5.331e-3365.96Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PR4A_TOBAC5.331e-3365.96Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PRP2_SOLLC1.452e-3065.52Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WHW2_WHEAT5.164e-2865.52Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT1.150e-2763.22Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
WIN1_SOLTU9.739e-2768.12Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU2.170e-2668.12Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVL_ARATH2.833e-2670.00Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
BARW_HORVU1.837e-2571.83Barwin OS=Hordeum vulgare PE=1 SV=1[more]
HEVE_HEVBR5.908e-2466.67Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionEST0177 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ255 similar to PR-4 protein (acc# AAC33732), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250377 ID=CB250377; Name=CB250377; organism=Citrus sinensis; type=EST; length=305bp
AGTTAAGCTAAAAAAAATTAAGAGAAAAATATGGGGAGGTTCGGTCTTTG
TGTGATTCTGTCACTTTGTCTACTGGTGGCCACTGCTTCTGCCCAAAGTG
CTTCTAATGTGAGAGCCACGTATCATCTCTACCACCCTGAGCAAATTGGA
TGGGACTTGACGGCAGCGAGCGCTTTCTGCGCAACATGGGATGCCAGCAA
GCCCTTGGCCTGGCGCCAGAAATATGGCTGGACCGCTTTCTGTCATTCGG
GCGGACCCATTGGACAAGCTGCTTGTGGCAGGTGCTTAAGGGTCACAAAC
AGTGG
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