CB250380

Overview
NameCB250380
Unique NameCB250380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11528 contig Csv1_Contig11528:28..428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB250380 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.541e-21
Identity = 44/74 (59.46%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:  123 NVAEAYGRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 344
            NV E Y   KLR ++C P+C+YRCSATSHKKP              VP G YGNKQ CPCYNNWKT+EG PKCP
Sbjct:   25 NVVEGYN--KLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96
[Close]
BLAST of CB250380 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.295e-20
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 3 
Query:  132 EAYG--RGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 344
            + YG   G+L   +C PKC+YRCS TS+KKP              VP GTYGNKQ CPCYNNWKTK GGPKCP
Sbjct:   40 QLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112
[Close]
BLAST of CB250380 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.626e-16
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 3 
Query:  138 YGRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 344
            YG G L+ ++C  +C  RC  T + K               VPPG YGNKQVC CYNNWKT+EGGPKCP
Sbjct:   38 YGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106
The following BLAST results are available for this feature:
BLAST of CB250380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RSI1_SOLLC3.541e-2159.46Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC2.295e-2057.53Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
GASA4_ARATH2.626e-1650.72Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionEST0182 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ262 similar to GASA5-like protein (acc# AAC32128), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250380 ID=CB250380; Name=CB250380; organism=Citrus sinensis; type=EST; length=398bp
AAAGAATCATCTCACAGAGTGAGCGAAGTGAGGTAACTCTAGTGTAGAAG
AGAATACACATGGCCACCTCTCGCAGCTCAATTCTGTTGTTGGTGTCAAT
TCTTCTTTTGATCACACTCTCCAATGTGGCTGAGGCTTATGGTCGTGGCA
AGCTCCGGTCATCAGAATGCAATCCAAAGTGTTCTTATCGGTGTTCGGCG
ACGTCGCACAAGAAGCCATGCATGTTCTTTTGCTTAAAGTGCTGCTCAAA
ATGCCTGTGCGTGCCTCCTGGAACTTACGGAAACAAGCAAGTTTGCCCTT
GTTACAATAACTGGAAGACCAAGGAGGGAGGACCCAAATGCCCTTGATTG
AGAATTTTTTTTTTTTTATCGAATCAATTTTATGTCACTAATAAACAG
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