CB290196

Overview
NameCB290196
Unique NameCB290196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: RRMJ3_DICDI (rRNA methyltransferase 3 homolog OS=Dictyostelium discoideum GN=fsjC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.797e-27
Identity = 66/168 (39.29%), Postives = 97/168 (57.74%), Query Frame = -3
Query:  319 DEEVDTKAEILACAKKMLRKKQREQILDDVYNRYMFDDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPK--RPKKEYVVAKKGVQVRAGKGKV-LVDPRMKKDSR 813
            DE++D K +  A  + ++RKK R+ ++DD +N+Y F+D GLP+WF ++E RH +A  P+TKE +  ++ + KEID                    K+EK R KA+ I D  ++S+R K K IE+LY     K  +PKK  ++AKK      G GK  +VD RMKKD R
Sbjct:  638 DEDIDDKIKTKALGEFLIRKKSRQDLIDDSFNKYAFNDTGLPNWFTDDENRHNKAQTPLTKEMVDEIRRKIKEIDDRPIKKIAEAKARKKYRLGKKMEKTRDKASSIVDNPEMSNREKSKAIEKLYSGTDKKNMKPKKIIMIAKKSKTAGGGTGKYKIVDKRMKKDLR 805          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: SPB1_ASPFU (AdoMet-dependent rRNA methyltransferase spb1 OS=Aspergillus fumigatus GN=spb1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.058e-21
Identity = 62/168 (36.90%), Postives = 98/168 (58.33%), Query Frame = -3
Query:  319 AEILACAKKMLR-KKQREQILDDVYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKEYVV-----AKKGV--QVRAGKGKV-LVDPRMKKDSR 792
            AE +A A++M   +K+ + I+DD +NRY F D DGLP+WFL++E +H +  RP+TK   AA+K + + I+                    +LEK+RKK+ +++D   +S+R K + I +L   AV K+PK++  +     A +G+  + R  KGK  +VD RMKKD R
Sbjct:  618 AEAMALAQQMATGEKKSQDIIDDGFNRYTFRDVDGLPEWFLDDENKHSKPQRPITKAAAAAIKEKLRAINARPIKKVMEAKGRKKMKAAQRLEKLRKKSALLADDEALSERDKSQAIAKLMSKAVKKKPKQQVKLVVARGANRGISGRPRGVKGKYKIVDSRMKKDIR 785          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: SPB1_EMENI (AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans GN=spb1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 60/168 (35.71%), Postives = 98/168 (58.33%), Query Frame = -3
Query:  319 AEILACAKKMLR-KKQREQILDDVYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKK--EYVVAKKGVQVRAG-----KGKV-LVDPRMKKDSR 792
            AE +A A++M   +K+ + + DD +NRY F D DGLP+WFL++E +H +  RP+TK   AA++ +++ I+                    ++EK+RKK+ +++D   +S+R K + I ++   A  K+PK+  + VVAK G +  +G     KGK  +VD RMKKD R
Sbjct:  628 AEAMALAQQMATGEKKSQDVFDDGFNRYAFRDVDGLPEWFLDDENKHSKPNRPITKAAAAAIQEKWRAINARPIKKVMEAKGRKKFKAAQRIEKLRKKSALLADDETMSERDKAQAIARMMSRAAKKKPKQNVKLVVAKGGNRGISGRPKGVKGKYKIVDARMKKDVR 795          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: RRMJ3_HUMAN (Putative rRNA methyltransferase 3 OS=Homo sapiens GN=FTSJ3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.467e-18
Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = -3
Query:  319 KKQREQILDDVYNRYMFDDDG--LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV--QVRAGKGK----VLVDPRMKKDSR 756
            KK +  ++D+ +NRY F++D   LP+WF++EE++HR    PV K+E+   + +++EI+                    +LE+ RKKA  + +  DIS+R K  Q+  LYK A   + K+   YVVAKKGV  +VR   G      +VD RMKKD R
Sbjct:  678 KKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVGKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQR 833          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: RRMJ3_PONAB (Putative rRNA methyltransferase 3 OS=Pongo abelii GN=FTSJ3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = -3
Query:  319 KKQREQILDDVYNRYMFDDDG--LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV--QVRAGKGK----VLVDPRMKKDSR 756
            KK +  ++D+ +NRY F++D   LP+WF++EE++HR    P+ K+E+   + +++EI+                    +LE+ RKKA  + +  DIS+R K  Q+  LYK A   + K+   YVVAKKGV  +VR   G      +VD RMKKD R
Sbjct:  672 KKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPIGKKEMEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQR 827          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: RRMJ3_RAT (Putative rRNA methyltransferase 3 OS=Rattus norvegicus GN=Ftsj3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.224e-17
Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = -3
Query:  319 KKQREQILDDVYNRYMF--DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV--QVRAGKGK----VLVDPRMKKDSR 756
            KK +  ++D+ +NRY F  +++ LP+WF++EE++HR    P+ K+E+   + +++EI+                    KLE+ +KKA  + +  DIS+R K  Q+  LYK A   + K++  YVVAKKGV  +VR   G      +VD RMKKD R
Sbjct:  661 KKAKRDLIDNSFNRYAFNEEEEELPEWFVQEEKQHRIRQLPLDKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKKLEQTKKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRQVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQR 816          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: RRMJ3_MOUSE (Putative rRNA methyltransferase 3 OS=Mus musculus GN=Ftsj3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.224e-17
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = -3
Query:  319 KKQREQILDDVYNRYMFDDDG--LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGV--QVRAGKGK----VLVDPRMKKDSR 756
            KK +  ++D+ +NRY F+++   LP+WF +EE++HR    PV K+E+   + +++EI+                    KLE+ +KKA  + +  DIS+R K  Q+  LYK A   + K++  YVVAKKGV  +VR   G      +VD RMKKD R
Sbjct:  669 KKAKRDLIDNSFNRYAFNEEEGELPEWFAQEEKQHRIRQLPVDKKEVEHYRKRWREINARPIKKVAEAKARKKRRVLKKLEQTKKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRQVTYVVAKKGVGRKVRRPAGVKGHFKVVDSRMKKDQR 824          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: SPB1_CANGA (AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata GN=SPB1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 58/180 (32.22%), Postives = 99/180 (55.00%), Query Frame = -3
Query:  319 ESEDEEVD-TKAEILACAKKM-LRKKQREQILDDVYNRYMF-DDDGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPK---RPKKEYVVA---KKGVQVRAG--KGKV-LVDPRMKKDSR 822
            E  D+++D    E +  A ++ L ++ +  ++D+ +NRY F D + LP+WFLEEE++H +  RP+TKE + A+K + K ++                    +LEK++KKA +I+D +D S++ K ++I +L +    K   +PK   VVA    KG+  R    KGK  +VD  +K + R
Sbjct:  644 EKYDKDIDIATVEAMTLAHQLALGQRSKHDLVDEGFNRYAFRDTENLPEWFLEEEKQHSKVNRPITKEAVMALKEKMKALNARPIKKVAEARARKKMRAVKRLEKIKKKAGLINDDSDKSEKDKAEEIAKLMRKVTKKQKTKPKVTLVVAHGKNKGLSGRPKGIKGKYKMVDGVLKNEQR 823          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: SPB1_SCHPO (AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces pombe GN=spb1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.075e-17
Identity = 60/181 (33.15%), Postives = 100/181 (55.25%), Query Frame = -3
Query:  319 ESEDEEVDTK---AEILACAKKML-RKKQREQILDDVYNRYMFDD-DGLPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAK---KGVQVR--AGKGKV-LVDPRMKKDSR 822
            +S+++E + +   AE +  A+ +  R+K +  ++D+ YNR+ F   +GLPDWFL+EE    +  +P+TKE + A++ + K ++                    +L++V KKA  IS+  D+++  K K+I +L   A   +PK +   VVAK   KG++ R    KGK  +VD RMKKD R
Sbjct:  611 DSDNDENNVEIVTAEAMTLAQDIASRRKSKADLIDEGYNRWSFQSKEGLPDWFLDEETTVNKPNKPITKEAVLALREKMKALNARPIKKVLEAQGRKKMRTIKRLQRVAKKAEGISESGDMTESEKAKEISRLVSRATKSKPKAKPTLVVAKGPNKGLKSRPKGVKGKYKMVDSRMKKDLR 791          
BLAST of CB290196 vs. ExPASy Swiss-Prot
Match: RRMJ3_CHICK (Putative rRNA methyltransferase 3 OS=Gallus gallus GN=FTSJ3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.935e-17
Identity = 53/157 (33.76%), Postives = 88/157 (56.05%), Query Frame = -3
Query:  319 KKQREQILDDVYNRYMFDDDG--LPDWFLEEERRHRQAIRPVTKEEIAAMKAQFKEIDXXXXXXXXXXXXXXXXXXXXKLEKVRKKANVISDQADISDRSKRKQIEQLYKSAVPKRPKKE--YVVAKKGVQVRA-------GKGKVLVDPRMKKDSR 756
            KK +  ++DD +NRY F+++   LP+WF EEE++HR+   P+ K+ +   + ++++I+                    K+E+++KKA  +    DIS+R K  Q+ ++YK A   + K++  Y+VAKKGV  R        G+ KV VD R+KKD R
Sbjct:  665 KKAKRDLIDDSFNRYSFNEEEGELPEWFTEEEKQHRRKQIPLDKQTVEEYRQRWRQINARPIKKVAEAKARKKRRMLKKMEQMKKKAEAVVSTVDISEREKVAQLRRIYKKAGLGKEKRQVTYLVAKKGVGPRVRRPPGVKGQFKV-VDSRLKKDVR 820          
The following BLAST results are available for this feature:
BLAST of CB290196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RRMJ3_DICDI3.797e-2739.29rRNA methyltransferase 3 homolog OS=Dictyostelium ... [more]
SPB1_ASPFU9.058e-2136.90AdoMet-dependent rRNA methyltransferase spb1 OS=As... [more]
SPB1_EMENI1.708e-1935.71AdoMet-dependent rRNA methyltransferase spb1 OS=Em... [more]
RRMJ3_HUMAN2.467e-1837.18Putative rRNA methyltransferase 3 OS=Homo sapiens ... [more]
RRMJ3_PONAB5.495e-1836.54Putative rRNA methyltransferase 3 OS=Pongo abelii ... [more]
RRMJ3_RAT1.224e-1735.90Putative rRNA methyltransferase 3 OS=Rattus norveg... [more]
RRMJ3_MOUSE1.224e-1736.54Putative rRNA methyltransferase 3 OS=Mus musculus ... [more]
SPB1_CANGA2.088e-1732.22AdoMet-dependent rRNA methyltransferase SPB1 OS=Ca... [more]
SPB1_SCHPO6.075e-1733.15AdoMet-dependent rRNA methyltransferase spb1 OS=Sc... [more]
RRMJ3_CHICK7.935e-1733.76Putative rRNA methyltransferase 3 OS=Gallus gallus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01aa04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290196 ID=CB290196; Name=CB290196; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTGAGCCTGCAACAATTAACTCGTGATTCATTACACTT
TTTCTTTAAGTTGATGCGGTACATTATAACGGTCGTGCACAAATGAAACA
AAAGAAACCAAAAATGAAGTAACATTGACAAAGGAATTAAAAAAATGACC
AAAATCTTTTTGAACTTTGCCAGTTCAGCCATGCATGCCCATCTCTGTTC
ACTTGTTTCCTTTCTTTCCTTTCTTTGACGAAGCCTTCACAGATCCTTTA
CCTTTGCGCGCCTTGCCAATATTCCCCTTCTTCGAACCACCTTTTCTGGC
CTTGCCAGATCCATGTGTCCTTGAATCCTTTTTCATTCGTGGATCAACAA
GAACCTTCCCCTTTCCAGCCCTCACTTGAACTCCCTTCTTCGCAACCACA
TATTCCTTTTTAGGCCTTTTGGGTACAGCTGACTTGTATAATTGTTCAAT
TTGCTTCCTCTTTGAGCGATCAGAGATGTCTGCTTGGTCTGATATGACAT
TCGCCTTCTTGCGAACCTTCTCAAGCTTTCGCATGGCAACCCGCTTCTTT
CGGGCTTTGGCCTCAGCCACCTTCTTAGCAGGTCGGGCATCAATTTCTTT
GAATTGTGCTTTCATTGCAGCAATCTCCTCCTTGGTAACAGGCCTAATTG
CTTGCCGATGCCTCCTTTCCTCTTCTAAAAACCAGTCTGGCAAGCCATCA
TCATCAAACATGTACCTATTGTAAACATCATCCAGAATCTGCTCCCTTTG
CTTTTTCCTTAGCATCTTCTTTGCACAAGCCAATATCTCAGCTTTTGTAT
CAACCTCTTCATCTTCTGATTCAT
back to top