CB290205

Overview
NameCB290205
Unique NameCB290205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig124 contig Csv1_Contig124:1549..2275. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290205 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.428e-79
Identity = 139/205 (67.80%), Postives = 170/205 (82.93%), Query Frame = -3
Query:  114 NCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVEV-HMSEKKPDLFDGEVSSELTTSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEEEMYRWPVEIQV 725
            NCQGAGWCK TKK +IHD SPGTLT S+R  D + ++Q+AG  W+GD+IVYA+RSGEVVRLPKGAS+P+TLKVLEYELFH  PLKEI+ NISFA IGL+DMFNS GA+E++++ H+++K P+ FDGE+SS  + +LSDNRSPTA +S  VRGCGRFG YSSQRPLKC V S +TDFTYD+  GL+T+ LPV  EEM+RW VEI V
Sbjct:  570 NCQGAGWCKETKKNQIHDTSPGTLTGSIRADDADLISQVAGEDWSGDSIVYAYRSGEVVRLPKGASIPLTLKVLEYELFHISPLKEITENISFAPIGLVDMFNSSGAIESIDINHVTDKNPEFFDGEISS-ASPALSDNRSPTALVSVSVRGCGRFGAYSSQRPLKCAVESTETDFTYDAEVGLVTLNLPVTREEMFRWHVEILV 773          
BLAST of CB290205 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.837e-41
Identity = 87/204 (42.65%), Postives = 118/204 (57.84%), Query Frame = -3
Query:  117 NCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVEVHMSEKKPDLFDGEVSSELTTSLSDNRSPTATISFKVRGCGRFGIYSS-QRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEEEMYRWPVEIQ 725
            NCQGAGWCK  K+  IHD+ PGT++  VR  DV  + ++A   W GD+IVY+H  GE+V LPK  S+PVTL   EYE+F   P+KE S    FA +GL++MFNSGGA+ ++                         D+      +  K+RG G  G+YSS +RP   TV S   ++ Y+  +GL+T TL VPE+E+Y W V IQ
Sbjct:  574 NCQGAGWCKNEKRYLIHDQEPGTISGCVRTNDVHYLHKVAAFEWTGDSIVYSHLRGELVYLPKDTSLPVTLMPREYEVFTVVPVKEFSDGSKFAPVGLMEMFNSGGAIVSLRY-----------------------DDEGTKFVVRMKLRGSGLVGVYSSVRRPRSVTVDSDDVEYRYEPESGLVTFTLGVPEKELYLWDVVIQ 754          
BLAST of CB290205 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 70/207 (33.82%), Postives = 110/207 (53.14%), Query Frame = -3
Query:  120 NCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAG--AGWNGDAIVYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVEVHMSEKKPDLFDGEVSSELTTSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTL---PVPEEEMYRWPVEI 725
            NCQGA W    +K   H     +LT S+R  DV ++++ +     WNGD  VY+   GE++ +P   S+PV+LK+ E+E+F   P+  +   +SFA IGL++M+NSGGA+E +     + K                         +  +V+GCG+FG YSS +P +C V S +  F YDS++GL+T  L   P+  +  +   VE+
Sbjct:  568 NCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWNGDCAVYSQSRGELIVMPYNVSLPVSLKIREHEIFTVSPISHLVDGVSFAPIGLVNMYNSGGAIEGLRYEAEKMK-------------------------VVMEVKGCGKFGSYSSVKPKRCVVESNEIAFEYDSSSGLVTFELDKMPIENKRFHLIQVEL 749          
BLAST of CB290205 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 59/199 (29.65%), Postives = 100/199 (50.25%), Query Frame = -3
Query:  147 NCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAG----WNGDAIVYAHRSGEVVRL-PKGASVPVTLKVLEYELFHFCPLKE-ISSNISFAAIGLLDMFNSGGAVENVEVHMSEKKPDLFDGEVSSELTTSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEE 725
            NCQGAGW     + + + E   T++ +V V+D+E       AG    + GD +VY  +S E++ +  K  ++ +TL+   ++L  F P+ E +SS + F  +GL++MFN  G V++++V                       DN     +I   V+G GRF  YSS  P+KC +   + +F ++  TG ++  +P  EE
Sbjct:  693 NCQGAGWSPEEHRFKGYKECYTTVSGTVHVSDIEWDQNPEAAGSQVTYTGDYLVYKQQSEEILFMNSKSEAMKITLEPSAFDLLSFVPVTELVSSGVRFVPLGLINMFNCVGTVQDMKV---------------------TGDN-----SIRVDVKGEGRFMAYSSSAPVKCYLNDKEAEFKWEEETGKLSFFVPWVEE 865          
BLAST of CB290205 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 50/181 (27.62%), Postives = 80/181 (44.20%), Query Frame = -3
Query:  192 NCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAI--VYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISSN-ISFAAIGLLDMFNSGGAVENVEVHMSEKKPDLFDGEVSSELTTSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYD 725
            NCQG GWC  T++ +   E    +T      D+E           G  +  VY  +  ++  +     + V+L+   +EL    PLK  S   I FA IGL++M NSGGAV+++E          FD   S                +   VRGCG   +++S++P+ C +  +  +F Y+
Sbjct:  620 NCQGGGWCPETRRNKSASEFSHAVTCYASPEDIEWCNGKTPMDIKGVDVFAVYFFKEKKLSLMKCSDRLEVSLEPFSFELMTVSPLKVFSKRLIQFAPIGLVNMLNSGGAVQSLE----------FDDSAS---------------LVKIGVRGCGELSVFASEKPVCCKIDGVSVEFDYE 775          
BLAST of CB290205 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 57/196 (29.08%), Postives = 90/196 (45.92%), Query Frame = -3
Query:  147 NCQGAGWCKITKKTRIHDESPGTLTASVRVTDVE--NMAQIAGAGWNGDAIVYAHRSGEVVRLP-KGASVPVTLKVLEYELFHFCPLKEISSNISFAAIGLLDMFNSGGAVENVEVHMSEKKPDLFDGEVSSELTTSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLPVPEE 725
            NCQGAGW  I +K R   E    +  +V VT+VE     + +  G   + +VY +++ E+  +  K   +  T++   +EL+ F P+ ++   I FA IGL +MFNSGG V ++E   +  K                            KV+G G F  YSS+ P K  +   + DF +    G + + +P  EE
Sbjct:  675 NCQGAGWDPIMQKFRGFPECYKPIPGTVHVTEVEWDQKEETSHLGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTNMFNSGGTVIDLEYVGNGAK---------------------------IKVKGGGSFLAYSSESPKKFQLNGCEVDFEW-LGDGKLCVNVPWIEE 842          
BLAST of CB290205 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 59/193 (30.57%), Postives = 86/193 (44.56%), Query Frame = -3
Query:  159 NCQGAGWCKITKKTRIHDESPGTLTASVRVTDVENMAQIAGAGWNGDAI-VYAHRSGEVVRLPKGASVPVTLKVLEYELFHFCPLKEISS---NISFAAIGLLDMFNSGGAVENVEVHMSEKKPDLFDGEVSSELTTSLSDNRSPTATISFKVRGCGRFGIYSSQRPLKCTVGSIQTDFTYDSATGLMTMTLP 725
            NCQG GW +  ++          +TA     DVE     +  G  GD   VY   + ++  L +  SV +TL+   YEL    P++ I S    I FA IGL +M N+GGAV+  E           DG+V++E+                 V+G G    YSS RP  C V     +F Y+   G++T+ +P
Sbjct:  605 NCQGGGWSREARRNMCAAGFSVPVTARASPADVE----WSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARK-------DGDVAAEVA----------------VKGAGEMVAYSSARPRLCKVNGQDAEFKYED--GIVTVDVP 768          
The following BLAST results are available for this feature:
BLAST of CB290205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RFS2_ARATH3.428e-7967.80Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH2.837e-4142.65Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH1.321e-3033.82Probable galactinol--sucrose galactosyltransferase... [more]
RFS4_ARATH3.731e-1729.65Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA3.269e-1327.62Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
STSYN_PEA4.269e-1329.08Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS_ORYSJ7.282e-1330.57Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290205 ID=CB290205; Name=CB290205; organism=Citrus sinensis; type=EST; length=727bp
CAAATGCAAGTCATGTATCACCACAGCTTCCCACTTAAATGGAAACCACC
CCTGAACATGGGGACAAATCTAACAATCTGATGTTATTTAATAACATAAC
ATGAAAGTCCTTAGACTTGGATCTCAACAGGCCATCTGTACATCTCTTCC
TCCGGAACCGGGAGTGTCATGGTCATCAACCCGGTTGCAGAATCGTAGGT
GAAGTCGGTCTGGATGCTGCCCACGGTGCATTTCAGAGGACGCTGGGAAG
AGTAAATGCCAAACCTTCCACATCCCCTAACTTTGAAAGAGATTGTGGCG
GTTGGAGATCGGTTGTCACTGAGGGAGGTGGTCAGTTCAGAAGATACTTC
ACCATCAAAGAGATCTGGCTTCTTCTCAGACATATGCACCTCCACATTCT
CGACAGCACCTCCACTGTTGAACATGTCGAGCAAGCCTATTGCTGCGAAT
GAAATGTTTGAAGAGATCTCCTTCAGCGGGCAGAAATGGAATAGCTCGTA
TTCAAGAACCTTAAGTGTTACTGGCACTGAAGCACCTTTGGGCAACCGCA
CAACCTCACCTGATCTATGGGCATAAACAATTGCATCCCCATTCCAGCCG
GCACCAGCAATCTGAGCCATATTTTCAACATCAGTTACACGAACAGATGC
TGTGAGGGTACCGGGAGATTCATCATGAATGCGGGTTTTCTTGGTAATCT
TGCACCAACCAGCACCTTGACAGTTGA
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