CB290210

Overview
NameCB290210
Unique NameCB290210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig125 contig Csv1_Contig125:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290210 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.803e-14
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 1
Query:  181 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 270
            +KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   90 EKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          

HSP 2 Score: 44.2838 bits (103), Expect = 1.803e-14
Identity = 17/28 (60.71%), Postives = 24/28 (85.71%), Query Frame = 3
Query:   15 YKKDHPKNKSFAAVGKAGGEKWKSMSEA 98
            + K+HP+NK+ +AVGKA G KWK+MS+A
Sbjct:   62 FNKEHPENKAVSAVGKAAGAKWKTMSDA 89          
BLAST of CB290210 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 2.607e-12
Identity = 18/30 (60.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:  181 DKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 270
            +KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   82 EKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          

HSP 2 Score: 45.0542 bits (105), Expect = 2.607e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 3
Query:   15 YKKDHPKNKSFAAVGKAGGEKWKSMSEA 98
            YK+ HP NKS A VGKAGG+KWK ++ A
Sbjct:   54 YKEKHPNNKSVAVVGKAGGDKWKQLTAA 81          
BLAST of CB290210 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.548e-11
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 3
Query:    9 EQYKKDHPKNKSFAAVGKAGGEKWKSMSE 95
            EQYKKDHP NKS AAVGKA GE+WKS+SE
Sbjct:   61 EQYKKDHPNNKSVAAVGKACGEEWKSLSE 89          

HSP 2 Score: 32.7278 bits (73), Expect = 3.548e-11
Identity = 13/27 (48.15%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  178 QDKAPYVAKAEKRKVEYEKDMKNYNRR 258
            ++KAPYV +A K+K EYE  ++ YN++
Sbjct:   90 EEKAPYVDRALKKKEEYEITLQAYNKK 116          
The following BLAST results are available for this feature:
BLAST of CB290210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HMGL_SOYBN1.803e-1476.67HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI2.607e-1260.00HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA3.548e-1182.76HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290210 ID=CB290210; Name=CB290210; organism=Citrus sinensis; type=EST; length=731bp
GCCTGTGGGAACAATACAAGAAGGATCATCCTAAGAACAAATCCTTTGCT
GCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGT
AAGTGGATTAGTGTTAGTTTGAAGATCTCTAAATATGCAGTTATGAATTT
TGCAATTAAATTAGAATTCGATTAATACAGGATAAAGCACCGTATGTTGC
TAAGGCAGAGAAGCGCAAGGTTGAGTATGAGAAGGATATGAAAAACTACA
ATAGGAGACAGGCGGAGGGAACTAAGCCGGAGGAAGAAGAGGAGTCTGAG
AAGTCTATGTCAGAGGTGAATGATGAGGATGATGATGAAGAAGGCAGTGG
CGAGGTTTTTTTTTTGGGGATGTTTTGATTTTTAGTTTGACTTGTTATCA
TTGTTATGTGGTTTTTCTTGAATTTGTTTGTTGATTTATTGTTTTTGGTT
TTGTGCAGGAGGATGATGATGAATAGAAGTTGAAGGAAGAAATTAGCATA
GTCATGTTAGGCTGTGACAATGTTTCAAACAACATATGTTAATGCTTTGT
GCTTCCATGTTAATTTTTTTGGATGCTTTCATCATCTTCATCATCATGTA
AGAGAATCATGTTGCTTCTCCCTCGACATTTTCTTATGCCTGCCTTTCGA
AGAATTAATAGCTGTAGGTGGGAGATTCACTGCTCTATATGTACTGTGTT
CTAAAGCTTAATGATTTAGCTAAGGCGTTCC
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