CB290211

Overview
NameCB290211
Unique NameCB290211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:631..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.156e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = -3
Query:  228 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 767
            IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  166 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.546e-93
Identity = 170/180 (94.44%), Postives = 176/180 (97.78%), Query Frame = -3
Query:  228 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 767
            IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  162 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.858e-88
Identity = 161/180 (89.44%), Postives = 170/180 (94.44%), Query Frame = -3
Query:  228 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 767
            +KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  159 VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.595e-85
Identity = 158/180 (87.78%), Postives = 168/180 (93.33%), Query Frame = -3
Query:  228 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 767
            IKHAALFTST+MS LLARPNVKLFNAVA EDLIV+GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  165 IKHAALFTSTVMSLLLARPNVKLFNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.304e-84
Identity = 154/169 (91.12%), Postives = 163/169 (96.45%), Query Frame = -3
Query:  261 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 767
            +KHAALFTST+MS+LLARPNVKLFNAVA EDLIV+ GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  162 VKHAALFTSTVMSRLLARPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.238e-54
Identity = 107/162 (66.05%), Postives = 128/162 (79.01%), Query Frame = -3
Query:  294 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 767
            +KHAALFTSTIMSK+L  PN KLFNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  152 VKHAALFTSTIMSKVLQLPNCKLFNATCVEDLITRPSKEGVRISGVVTNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.238e-54
Identity = 106/162 (65.43%), Postives = 128/162 (79.01%), Query Frame = -3
Query:  294 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 767
            +KHAALFTSTIMSK+L  PN+KLFNA   EDLI +    G R+ GVVTNW LVSM+HD QSCMDPN + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  148 VKHAALFTSTIMSKVLQMPNIKLFNATCVEDLITRPSEEGVRIAGVVTNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 6.119e-53
Identity = 108/176 (61.36%), Postives = 128/176 (72.73%), Query Frame = -3
Query:  255 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 767
            +KHAALFTST+M++ LA PNVKLFNA A EDLIVK G     R+ GVVTNW LVS+NH  QSCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  153 VKHAALFTSTVMARTLALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.154e-51
Identity = 102/179 (56.98%), Postives = 131/179 (73.18%), Query Frame = -3
Query:  252 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 767
            +KHAALFTST++SK+LA PNVK+FNA A EDLI+K         R+ G VTNW LVS+NHD QSCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  157 VKHAALFTSTVLSKVLAMPNVKMFNATACEDLIIKPCPINPGVQRIAGCVTNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CB290211 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.358e-51
Identity = 99/163 (60.74%), Postives = 127/163 (77.91%), Query Frame = -3
Query:  294 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 767
            +KHA+LFTST+MSK+L+ PNVKLFNA A EDLI +       ++ GVV NW LV+++HD  SCMDPN + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  154 VKHASLFTSTLMSKVLSFPNVKLFNATAVEDLITRPTENGNPQIAGVVVNWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
The following BLAST results are available for this feature:
BLAST of CB290211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
THI4_CITSI8.156e-98100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL3.546e-9394.44Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH5.858e-8889.44Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.595e-8587.78Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE2.304e-8491.12Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH4.238e-5466.05Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX4.238e-5465.43Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO6.119e-5361.36Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA1.154e-5156.98Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_ASPOR3.358e-5160.74Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01aa12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290211 ID=CB290211; Name=CB290211; organism=Citrus sinensis; type=EST; length=769bp
AAAGGACAAAGAAATTAAAATTACAGGTTCCATGATGGACCGCAAACAAA
CACTTTATTCACAAAACCTCACAACATTATCTCATTATTCGCATCAACCA
TCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGC
ATGCACACAGCTGATGAGTGATGATGCCTGTTATTACCAAATTAAGCATC
AGCAGTCTCAGCAAAATCAGCTGCAGCTAAAATCAGCTCAGGGTGAACGC
CTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAAC
GCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGG
CCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTA
TCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCA
GAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCGAT
ACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCATCATGGCCAC
AAGAGCTCACAACCACCTTCGCTTCCATTACATTGGGATCCATGCAAGAC
TGTGTATCGTGATTCATTGACACCAACGCCCAGTTGGTCACCACACCACC
AACTCTGCCGCCTTTGACTATCAAGTCCTCGGCTGCCACTGCATTAAAGA
GCTTGACGTTGGGGCGGGCCAGGAGCTTGCTCATTATAGTGGAGGTGAAC
AGCGCTGCATGCTTGATCA
back to top