CB290213

Overview
NameCB290213
Unique NameCB290213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290213 vs. ExPASy Swiss-Prot
Match: ALKB_ECOLI (Alpha-ketoglutarate-dependent dioxygenase alkB OS=Escherichia coli (strain K12) GN=alkB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 54/161 (33.54%), Postives = 75/161 (46.58%), Query Frame = -3
Query:  217 YGNIRPTDGDVPPIIPAEFHQLVGKAIQDSRALIEKIFPGRKDIEAELPCMSPDICIANFYSATGKLGLPQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 699
            Y  I P      P +P  FH L  +A                   A  P   PD C+ N Y+   KL L QDKDE     D   P+VS S+G  A F +G L+     K+++LE GDV+++GG+SR  +HG++ +     P ++         R NLTFRQ
Sbjct:   78 YSPIDPQTNKPWPAMPQSFHNLCQRAAT----------------AAGYPDFQPDACLINRYAPGAKLSLHQDKDEP----DLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTI-------DCRYNLTFRQ 211          
BLAST of CB290213 vs. ExPASy Swiss-Prot
Match: ALKB_SALTY (Alpha-ketoglutarate-dependent dioxygenase alkB OS=Salmonella typhimurium GN=alkB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = -3
Query:  217 IEAELPCMSPDICIANFYSATGKLGLPQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 570
            I A      PD C+ N Y+   KL L QDKDE     D   P+VS S+G  A F +G LR     ++++LE GD++++GG+SR  +HG++ +     P +          R NLTFRQ
Sbjct:  105 IAAGYASFQPDACLINRYAPGAKLSLHQDKDEP----DLRAPIVSVSLGVPAVFQFGGLRRSDPIQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMT-------GEFRYNLTFRQ 211          
BLAST of CB290213 vs. ExPASy Swiss-Prot
Match: ALKB_CAUCR (Alpha-ketoglutarate-dependent dioxygenase alkB homolog OS=Caulobacter crescentus GN=alkB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = -3
Query:  217 PCMSPDICIANFYSATGKLGLPQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 555
            P   PD C+ N Y    ++GL QD+DE+    D   PV+S S+GD+A F  G +      + + L SGDV    G +R  FHGV++I P ++  SL+       GR+NLT R+
Sbjct:  114 PETPPDSCLVNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGPARLAFHGVDRILPGSS--SLVP----GGGRINLTLRR 216          
BLAST of CB290213 vs. ExPASy Swiss-Prot
Match: ALKB_CAUCN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=alkB PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = -3
Query:  217 PCMSPDICIANFYSATGKLGLPQDKDESQESIDKCLPVVSFSIGDSAEFLYGDLRDVANAKKVILESGDVLIFGGKSRRIFHGVEKIFPDTAPKSLLEETSMRRGRLNLTFRQ 555
            P   PD C+ N Y    ++GL QD+DE+    D   PV+S S+GD+A F  G +      + + L SGDV    G +R  FHGV++I P ++  SL+       GR+NLT R+
Sbjct:  114 PETPPDSCLVNLYRDGARMGLHQDRDEA----DPRFPVLSISLGDTAVFRIGGVNRKDPTRSLRLASGDVCRLLGPARLAFHGVDRILPGSS--SLVP----GGGRINLTLRR 216          
The following BLAST results are available for this feature:
BLAST of CB290213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ALKB_ECOLI4.632e-1433.54Alpha-ketoglutarate-dependent dioxygenase alkB OS=... [more]
ALKB_SALTY6.689e-1337.29Alpha-ketoglutarate-dependent dioxygenase alkB OS=... [more]
ALKB_CAUCR4.794e-1138.05Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
ALKB_CAUCN4.794e-1138.05Alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ab02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290213 ID=CB290213; Name=CB290213; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTAATCAGAACTCAGAAATGATATTTCATTCATTT
TATCTTCCTTGCAAAATATGATATATTTATGGGTAAGTCTGCTAGCTTAA
AAAGAAACATATTTCTTCTTTCAACTCCCTATTTTATCATTCACAACATG
AGCAGAGGACGGCCATCTATACAATCACTCAGGACAGCTCCAAGCATATT
AACAAAGTCTTTAATACTGCCTGAAAGTAAGATTCAGGCGGCCACGACGC
ATACTTGTTTCTTCCAGCAGGGACTTAGGGGCAGTGTCTGGGAAAATTTT
TTCTACACCATGGAAAATTCTTCTAGATTTCCCACCAAATATTAAAACAT
CACCAGATTCCAGGATAACTTTCTTTGCATTGGCTACATCCCTCAGATCA
CCATATAAAAATTCTGCAGAATCTCCAATTGAGAAGGACACAACAGGTAA
ACATTTATCAATACTTTCTTGACTTTCATCTTTATCCTGAGGGAGGCCGA
GTTTCCCAGTTGCCGAATAAAAATTTGCAATACAGATATCAGGGGACATA
CAAGGAAGTTCAGCTTCTATATCTTTTCTCCCCGGAAATATTTTTTCTAT
GAGGGCACGGGAATCTTGGATTGCTTTCCCAACAAGCTGATGAAATTCAG
CCGGTATGATTGGTGGTACATCACCATCTGTTGGCCGGATATTGCCATAC
TGACTTGTCTCAGGGTCCCAATTTTTACCAAGGCACATCATTTTTAAATA
AAGGTTGGCGCCATCACGGTAGCCAGGTTGGTAAAAACCTCCCGGTCCCA
GCCCAA
back to top