CB290216

Overview
NameCB290216
Unique NameCB290216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 9.666e-78
Identity = 123/176 (69.89%), Postives = 145/176 (82.39%), Query Frame = -1
Query:  257 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 784
            AFQLY SGIFTG+CGT+LDHGV AVGYGTENG DYWIV+NSWG SWGE+GY+RMERN+  + +GKCGIA+E SYP+KKG+N              P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDD YSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  270 AFQLYSSGIFTGKCGTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 8.183e-77
Identity = 121/183 (66.12%), Postives = 145/183 (79.23%), Query Frame = -1
Query:  236 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 784
            AFQLY+SGIF G CGT LDHGV AVGYGTENG DYWIV+NSWG SWGE+GY+RM RN+A + +GKCGIA+E SYPIK G+N              P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  278 AFQLYDSGIFDGSCGTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.185e-65
Identity = 107/183 (58.47%), Postives = 132/183 (72.13%), Query Frame = -1
Query:  233 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 781
            FQ Y+SGIFTG+CGT++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SYP+K G N              P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+D YSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  160 FQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.566e-64
Identity = 111/180 (61.67%), Postives = 128/180 (71.11%), Query Frame = -1
Query:  260 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 781
            FQLY SG+F+GRCGTSLDHGV AVGYGT+NG DYWIV+NSWG  WGE+GY+RMERN+  T TGKCGIAM ASYP K G N              P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC D  SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  284 FQLYHSGVFSGRCGTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.668e-56
Identity = 101/181 (55.80%), Postives = 116/181 (64.09%), Query Frame = -1
Query:  257 FQLYESGIFTGRCGTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDPYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 781
            FQLY+SG+FTGRCGT+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASYPIKKG N                 CD Y  CP   TCCC +   N C  WGCCP+E ATCC D  +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  299 FQLYDSGVFTGRCGTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.865e-31
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = -1
Query:  542 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 781
            FQ Y+SGIFTG CGT+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASYP+K   N
Sbjct:  287 FQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASYPVKYSPN 366          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.975e-30
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = -1
Query:  542 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 784
            AFQ Y+SGIFTG+CGT++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASYP+K   N
Sbjct:  241 AFQHYQSGIFTGKCGTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASYPVKYSPN 320          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 55/81 (67.90%), Postives = 61/81 (75.31%), Query Frame = -1
Query:  542 FQLYESGIFTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKKGQN 781
            FQ Y  G+FTGRCGT LDHGV  VGYG T +G  YWIVKNSWG  WGE+GYIRM+R ++    GKCGIAMEASYPIK   N
Sbjct:  271 FQFYSEGVFTGRCGTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASYPIKTSAN 350          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.325e-26
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQLYESG+F G CGT+L+HGV  VGYGTENG DYWIVKNS G +WGEAGY++M RN+A    G CGIAM ASYP+K
Sbjct:  286 FQLYESGVFDGTCGTNLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASYPLK 360          
BLAST of CB290216 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.854e-26
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  554 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIK 781
            FQLYESG+F G CGT+L+HGV  VGYGTENG DYW+VKNS G +WGEAGY++M RN+A    G CGIAM ASYP+K
Sbjct:  279 FQLYESGVFDGSCGTNLNHGVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASYPLK 353          
The following BLAST results are available for this feature:
BLAST of CB290216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
ORYA_ORYSJ9.666e-7869.89Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH8.183e-7766.12Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC7.185e-6558.47Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ3.566e-6461.67Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ4.668e-5655.80Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH8.865e-3172.50Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA1.975e-3072.84Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CYSP_HEMSP1.014e-2667.90Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CPR4_ARATH1.325e-2671.05Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPR3_ARATH3.854e-2669.74Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290216 ID=CB290216; Name=CB290216; organism=Citrus sinensis; type=EST; length=784bp
ATTCCTCTAATTCAACGCCAATAGATAACTTACAACGCTATATACCAATA
CCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTACATTAA
CGTTTGGAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCAT
TCACAAGCACGAATATTTTCATCCTCCTTTCGGCCTTCCACTGCTCTTAC
AGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGC
CCAGTAAGGTTTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGT
TGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAG
TCATGTGGGCAGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAG
CGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGC
AGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGA
GGCTTTGTTGGAAATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCC
TTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGA
GAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAG
CTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGT
GCCATATCCAACAGCAGTAACACCATGGTCCAAAGATGTCCCACATCTTC
CCGTAAATATACCCGATTCATATAACTGGAATGC
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