CB290222

Overview
NameCB290222
Unique NameCB290222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:132..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.261e-59
Identity = 113/196 (57.65%), Postives = 139/196 (70.92%), Query Frame = -1
Query:  270 LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 857
            L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP            E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V EA+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:   13 LKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.461e-32
Identity = 83/212 (39.15%), Postives = 115/212 (54.25%), Query Frame = -1
Query:  273 QELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVH------YAAAE-------SKHLLVTN--SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFK 863
            + L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP           + +  + + H P L KR + Q  ++ + A + A  + SE Q  G            Y+  E       SK+  V    +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  YLPL+P + IAK F+
Sbjct:   18 KRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.156e-28
Identity = 81/215 (37.67%), Postives = 114/215 (53.02%), Query Frame = -1
Query:  270 QELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG-----------------PRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 863
            + L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP           D +  + D   PP+ K+V++Q  S  + A   A+ L SE +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   20 ERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.208e-24
Identity = 72/205 (35.12%), Postives = 107/205 (52.20%), Query Frame = -1
Query:  276 QELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 863
            + LR+L F++ AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   33 ERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.208e-24
Identity = 72/205 (35.12%), Postives = 107/205 (52.20%), Query Frame = -1
Query:  276 QELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 863
            + LR+L F++ AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   33 ERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.015e-22
Identity = 65/174 (37.36%), Postives = 87/174 (50.00%), Query Frame = -1
Query:  276 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 797
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP            E     D H P   K+V+SQ           A+++VSE +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 65/196 (33.16%), Postives = 100/196 (51.02%), Query Frame = -1
Query:  276 QELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 863
            + L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P           D +    D   PP+ K+V++Q +S+ + A +   ++ S     G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + I K F
Sbjct:    8 ERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of CB290222 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 60/202 (29.70%), Postives = 98/202 (48.51%), Query Frame = -1
Query:  270 ELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXDEASRKFDEHAPPLAKRVASQVHSLIETASQ-----KAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 860
            +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP           D+     + + P L K+ +SQ  ++     +       +++    +     AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y    YLP++PI+ I+   +Q
Sbjct:   40 KLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQ 229          
The following BLAST results are available for this feature:
BLAST of CB290222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH5.261e-5957.65REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI2.461e-3239.15Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH2.156e-2837.67REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ4.208e-2435.12REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI4.208e-2435.12REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRP_PHAVU3.015e-2237.36Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRPP_HEVBR1.954e-2133.16Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH2.822e-2029.70REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290222 ID=CB290222|Name=CB290222|organism=Citrus sinensis|type=EST|length=863bp
TTTTATTTTTTTTATGAACCCTTTATCTCCATTCACATATGGGGAAAACC
AAGTCTTAAAGGTCATTTACAGATTACAAACCATACTGCCACTACCCGGC
CACACCTTCAAGCCTAGAATTTTGCAAACCAGACCACTAGATGAAGCAAA
CTCATCAGACAAAAAGTAAATTCTTAGTCAGAATCTGAGCTTGAATCCTT
TTCCTTTGCATCTTCTTTCTTTGGAGCATCTTCTTTCTCTGGAGCATCTT
CTTTCTTGGGAGCTTCACTCTGCTTAAAAGCTTTGGCTATGTCATCAATG
GGAACCAAAGGAAGATAGCCAAAGACTGTGTAACCCTTCTTCGTCATCTC
CACGACAAGATGGTTATACTTCTTGGACCACTGTGCAGCTGTGGGAACAG
CCATATCTGCCATTGTGTGGAACAATGCATAGTGGTTTAGTTTATACCAT
GCTTTCACGGAATTTGTTACCAGAAGGTGTTTAGACTCAGCAGCAGCATA
ATGGACAGCTGCTCGAGGCCCCCCGGTTTGGGCCTCACTCACAAGATTTT
GAGCTTTCTGTGATGCTGTTTCAATTAGACTATGTACTTGGCTGGCAACC
CGCTTGGCCAAAGGGGGAGCGTGCTCGTCAAACTTGCGTGAAGCCTCATC
CACCTTCTTATCAAGAAAAACGAGGAGATCATCAGGCACGCCCTTGAATT
TCTGATAAACAGGTCCCACGACGGCAGTCACGGCGCTTTCGACAGTCCCA
ACCGGTGAGCGTAGCGGCCCCGAGTTGCGTTTTGCGTAGTCGTACAAACT
CGACACGCACACCAGAGCCTGAATCGCGGCTATCCTCATAAATCCAAGAT
GCCTCAGTTCCTG
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