CB290280

Overview
NameCB290280
Unique NameCB290280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 4.567e-106
Identity = 186/195 (95.38%), Postives = 194/195 (99.49%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGN 749
            MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS+KSFDNLNNWREEFLIQA+PSDP+NFPFVV+GNKID+DGGNSRVVSEKKARAWCA+KGNIPYFETSAKEGINVEEAFQ IAK+ALKSGEEEE+YLPDTIDVGN
Sbjct:    1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGN 195          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 8.062e-103
Identity = 180/193 (93.26%), Postives = 188/193 (97.41%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV 743
            M SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV+LGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NVE+AFQCI KNALK+  EEE+Y+PDT+DV
Sbjct:    1 MASRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNEPEEELYVPDTVDV 193          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.287e-100
Identity = 178/193 (92.23%), Postives = 186/193 (96.37%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV 743
            M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQA+PSDP+NFPFVVLGNKIDVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV++AFQCIAKNAL +  EEEIYLPDTIDV
Sbjct:    1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIYLPDTIDV 193          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.423e-99
Identity = 175/195 (89.74%), Postives = 187/195 (95.90%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGN 749
            M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQF+DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV+DVN MKSFDNLNNWREEFLIQASPSDP+NFPFVVLGNK+DVDGGNSRVVSEKKA+AWCASKGNIPYFETSAKEG NV+ AF+CIA+NALK+  EEEIYLP+TIDV +
Sbjct:    1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNEPEEEIYLPETIDVAS 195          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 5.596e-96
Identity = 168/193 (87.05%), Postives = 182/193 (94.30%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV 743
            M SRRR LLK+IILGDSGVGKTSLMNQ+VNKKFSNQYKATIGADFLTKE+QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL YDVN MKSF++LN WREEFLIQASP+DPDNFPFV+LGNKIDVDGG+ RVVSEKKA+AWC SKGNIPYFETSAK+G NVEEAFQCIAKNA+++  EEE YLPDTID+
Sbjct:    1 MASRRRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAIQNEPEEETYLPDTIDM 193          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.881e-84
Identity = 144/193 (74.61%), Postives = 174/193 (90.16%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV 743
            M +++R LLKVIILGDSGVGKTSLMNQYV KKF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCCVLV+DVN+ KSFD+L+NWR+EF+IQA P DPDNFPF+VLGNKID +GG+SR VSEKKA+AWCASKG+IPYFETSAKE INVE AF CI +NAL++ +EEE+++PD +D+
Sbjct:    1 MSTKKRRLLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKIDENGGSSRQVSEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFMPDAVDM 193          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.439e-83
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY 722
            M  RRRTLLKVI+LGD+GVGKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVL YDVN MKSFD L+NW EEFL QA+P DP +FPF++LGNKID+DGGNSRVVSEKKA+ WCASKGNIPYFETSAKE  NV+ AF CIAK AL +  E++IY
Sbjct:    1 MSLRRRTLLKVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANEHEQDIY 186          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.185e-83
Identity = 149/186 (80.11%), Postives = 164/186 (88.17%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY 722
            M  RRRTLLKVI+LGDSGVGKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFD L NW EEFL QA+P DP  FPF++LGNKID+DGGNSRVVSEKKA+ WCA+KGNIPYFETSAKE  NV+ AF CIAK AL +  E++IY
Sbjct:    1 MSLRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIY 186          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.338e-81
Identity = 146/191 (76.44%), Postives = 166/191 (86.91%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL-PDT 734
            M +RRRTLLKVIILGDSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP  FPF++LGNK+D+DGGNSRVVSEKKAR WCA KGNI YFETSAKE  NV+++F CI K AL +  +++IY  PDT
Sbjct:    1 MSTRRRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANERDQDIYFQPDT 191          
BLAST of CB290280 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.893e-81
Identity = 141/193 (73.06%), Postives = 172/193 (89.12%), Query Frame = 3
Query:  165 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDV 743
            M +++R +LK+IILGDSGVGKTSLMNQYV KKF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCC+LV+DVN+ KSFD+L+NWR+EF+IQA PSDPDNFPFVVLGNKID  G N R V+EKKA+AWCASKG+IPYFETSAKE INVE AF CI +NAL++ +EEE+++PD +D+
Sbjct:    1 MSTKKRRVLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGNKIDEVGVN-RQVTEKKAKAWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELFVPDAVDM 192          
The following BLAST results are available for this feature:
BLAST of CB290280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7_PEA4.567e-10695.38Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB7_CENCI8.062e-10393.26Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB7_PRUAR1.287e-10092.23Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB7_GOSHI1.423e-9989.74Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB7_MESCR5.596e-9687.05Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
YPTC5_CHLRE2.881e-8474.61GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]
RAB7_VIGAC2.439e-8379.57Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RAB7_SOYBN3.185e-8380.11Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
RAB7_ARATH1.338e-8176.44Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
YPTV5_VOLCA3.893e-8173.06GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290280 ID=CB290280; Name=CB290280; organism=Citrus sinensis; type=EST; length=751bp
GTCCTATCTTAATAAAAACCTTTTACAATATTTAAAAAAAAAAAAAATTC
CACCGGACGACACACGCAGAGCCTCAATAACAACTACGGAGCACATCAAA
ACGATCAACTGATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGA
TTTTCCCCAGAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATC
ATCCTCGGCGACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGT
AAACAAGAAGTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCT
TGACAAAGGAAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGG
GATACAGCTGGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCG
AGGTGCAGATTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCT
TTGACAACCTCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCT
TCGGATCCAGACAATTTCCCCTTTGTTGTTTTAGGAAATAAGATTGATGT
AGATGGTGGAAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCATGGT
GTGCTTCCAAAGGAAATATTCCTTACTTTGAGACCTCTGCAAAAGAAGGC
ATTAATGTGGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAG
TGGGGAGGAGGAAGAGATATACTTGCCGGACACCATTGATGTTGGTAACA
G
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