CB290288

Overview
NameCB290288
Unique NameCB290288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1474..2253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 38/53 (71.70%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:  157 RKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.846e-13
Identity = 38/53 (71.70%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:  157 RKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 37/53 (69.81%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGD NLHFVESPALAPPEVQID              A+QPLPDDDDDAFE
Sbjct:  169 RKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDD+ F+
Sbjct:  169 RKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 37/53 (69.81%), Postives = 37/53 (69.81%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGD NLHFVESPALAPPEVQID              ASQPLPDDDDD FE
Sbjct:  169 RKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGD NLHFVESPALAPPEVQID               +QPLPDDDD+AFE
Sbjct:  169 RKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGD NLHFVESPALAPPEV +D              A+QPLPDDDDDAFE
Sbjct:  169 RKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGD NLHFVESPALAPPEV ID              A+QPLPDDDD+AFE
Sbjct:  169 RKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221          
BLAST of CB290288 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 34/53 (64.15%), Postives = 36/53 (67.92%), Query Frame = -1
Query:  622 RKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 780
            RKLAGD NLHFVE+PALAPPEV ID              A+QPLPDDDDD FE
Sbjct:  169 RKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221          
The following BLAST results are available for this feature:
BLAST of CB290288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RAN1B_LOTJA2.846e-1371.70GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA2.846e-1371.70GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA2.409e-1269.81GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC2.409e-1267.92GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH3.146e-1269.81GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC9.154e-1266.04GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH1.561e-1166.04GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC3.478e-1166.04GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH7.749e-1164.15GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290288 ID=CB290288; Name=CB290288; organism=Citrus sinensis; type=EST; length=780bp
GAAATAAATTAAAACTATTCTCAACATAACTTTCAAACTACAACAATTAT
TATTTCGCAAATACTTTAATACTATAACTTAAAAACAACAATTGCTCAAC
CTCAATCCCGCATCCTTAAGAACGAAGCTAAACCGCTAACGAGATTTTGA
TTTTTTATTCCTATGTTTCCCTAATCAAACTCCATCATATTACTCAATTG
CCATTGGCAACAATGGGCCGTTGATTAGAACCAGCCATCACTGGCTCACT
GCCACTCAAGTCAATTTGAAACAAATATATTTGGCATAACGCTACAACTC
AGGACTCATGATTCAACTGATGCGCCACTGGTTGGAACATACAAAACTTA
TGCATAAAAGTATTGGAATGGCATAATCCACGTCACTGAAACATCATTCC
AGTAATAAGAAAACTCCCAAAAAAAAACAAGCATAAAAAGAGTCTCCAAC
AAGTATCTAAAGGTACAACCTAACTACTATAATCCATTGTTCTCGATGGT
CACCCCTACGCTGATAACCAAATCTCCGCCATGTGTTGAAAATTTCCAAA
ATAACAGCATTTTTAAGTCAAGCAGCAGTATGAGAGGTTGCGCCTACACC
CGTCCAAGCAGTTCCTCTCTACTCAAATGCATCATCATCGTCATCAGGAA
GAGGCTGGCTAGCTGCTGCGGCAAGCTCGGCTTCATGTTGTTGCTGTGCA
GCTAAGTCAATCTGTACTTCTGGAGGAGCGAGAGCAGGAGATTCCACGAA
GTGCAAATTTGGGTCCCCAGCAAGCTTCCT
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