CB290289

Overview
NameCB290289
Unique NameCB290289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1264..2108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.170e-55
Identity = 104/120 (86.67%), Postives = 105/120 (87.50%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF+
Sbjct:   90 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.170e-55
Identity = 104/120 (86.67%), Postives = 105/120 (87.50%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF+
Sbjct:   90 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.908e-55
Identity = 103/120 (85.83%), Postives = 104/120 (86.67%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDDDAFE
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.908e-55
Identity = 102/120 (85.00%), Postives = 104/120 (86.67%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDD+ F+
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.294e-54
Identity = 103/120 (85.83%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               SQPLPDDDDD FE
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.765e-54
Identity = 102/120 (85.00%), Postives = 104/120 (86.67%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDD+AFE
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 6.422e-54
Identity = 101/120 (84.17%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D               +QPLPDDDDDAFE
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.431e-53
Identity = 101/120 (84.17%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID               +QPLPDDDD+AFE
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.187e-53
Identity = 100/120 (83.33%), Postives = 102/120 (85.00%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID               +QPLPDDDDD FE
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CB290289 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.273e-53
Identity = 100/120 (83.33%), Postives = 102/120 (85.00%), Query Frame = 1 
Query:   10 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 369
            KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +  LPDDDD+AFE
Sbjct:  102 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CB290289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN1B_LOTJA1.170e-5586.67GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA1.170e-5586.67GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA9.908e-5585.83GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC9.908e-5585.00GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH1.294e-5485.83GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC3.765e-5485.00GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH6.422e-5484.17GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC1.431e-5384.17GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH3.187e-5383.33GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC9.273e-5383.33GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290289 ID=CB290289; Name=CB290289; organism=Citrus sinensis; type=EST; length=845bp
GCCCGTGGCAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTG
TGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATA
GGCAAGTCAAGGCAAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAG
TACTATGAGATTTCTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTT
GTACCTTGCCAGGAAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAAT
CTCCTGCTCTCGCTCCTCCAGAAGTACAGATTGACTTAGCTGCACAGCAA
CAACATGAAGCCGAGCTTGCCGCAGCAGCTAGCCAGCCTCTTCCTGATGA
CGATGATGATGCATTTGAGTAGAGAGGAACTGCTTGGACGGGTGTAGGCG
CAACCTCTCATACTGCTGCTTGACTTAAAAATGCTGTTATTTTGGAAATT
TTCAACACATGGCGGAGATTTGGTTATCAGCGTAGGGGTGACCATCGAGA
ACAATGGATTATAGTAGTTAGGTTGTACCTTTAGATACTTGTTGGAGACT
CTTTTTATGCTTGTTTTTTTTTGGGAGTTTTCTTATTACTGGAATGATGT
TTCAGTGACGTGGATTATGCCATTCCAATACTTTTATGCATAAGTTTTGT
ATGTTCCAACCAGTGGCGCATCAGTTGAATCATGAGTCCTGAGTTGTAGC
GTTATGCCAAATATATTTGTTTCAAATTGACTTGAGTGGCAGTGAGCCAG
TGATGGCTGGTTCTAATCAACGGCCCATTGTTGCCAATGGCAATTGAGTA
ATATGATGGAGTTTGATTAGGGAAACATAAGAATAAAAAATCAAA
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