CB290352

Overview
NameCB290352
Unique NameCB290352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290352_ssr259 microsatellite CB290352_ssr259:259..270. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.554e-58
Identity = 112/142 (78.87%), Postives = 125/142 (88.03%), Query Frame = -1
Query:  298 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALVA 723
            KDWRGGR  S NII SSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVVDLT RL K A+Y+++KAAIK+ SE SLKGILGYT++DVVS DFVGDSRSSIFDAKAGI L+ +F+K+VSWYD EWGYSNRV+DLI HMA VA
Sbjct:  195 KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMASVA 336          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.357e-58
Identity = 111/139 (79.86%), Postives = 123/139 (88.49%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGRG   NII SSTGAAKAVGKVLP LNGKLTGMAFRVPTP+VSVVDLT RL K ASY+++KAAIK  SEG LKGILGYT++DVVS DF+GD+RSSIFDAKAGI LS +F+KLVSWYD EWGYS+RV+DLI HMA
Sbjct:  199 KDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMA 337          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.357e-58
Identity = 112/139 (80.58%), Postives = 123/139 (88.49%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGR  S NII SSTGAAKAVGKVLPDLNGKLTGMAFRVPT +VSVVDLT  LAK ASY+++KAAIK  SEG LKGILGYT+EDVVS+DFVGDSRSSIFDAKAGI LS  F+K+V+WYD EWGYS+RV+DLI HMA
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.432e-58
Identity = 114/142 (80.28%), Postives = 124/142 (87.32%), Query Frame = -1
Query:  298 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMALVA 723
            KDWRGGR  S NII SSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVVDLT RL K ASY+D+KAAIK  SEG LKGILG+T++DVVS DFVGDSRSSIFDAKAGI LS +F+KLVSWYD EWGYS+RV+DLI HMA VA
Sbjct:  185 KDWRGGRATSFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEASYDDIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMASVA 326          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 9.706e-58
Identity = 110/138 (79.71%), Postives = 121/138 (87.68%), Query Frame = -1
Query:  310 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHM 723
            KDWRGGR  S NII SSTGAAKAVGKVLPDLNGKLTGM+FRVPT +VSVVDLT R+ KGASYED+K AIK ASEG LKGI+GY +ED+VS DF+GDSRSSIFDAKAGI L+  F+KLVSWYD EWGYSNRV+DLI HM
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHM 333          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.291e-57
Identity = 109/139 (78.42%), Postives = 123/139 (88.49%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGRG   NII SSTGAAKAVGKVLP LNGKLTGMAFRVPTP+VSVVDLT RL K A+Y+++KAAIK  SEG+LKGILGYT++ VVS DF+GDSRSSIFDA+AGI LS +F+KLVSWYD EWGYS+RV+DLI HMA
Sbjct:  199 KDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMA 337          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.291e-57
Identity = 108/139 (77.70%), Postives = 122/139 (87.77%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGR  S NII SSTGAAKAVGKVLPDLNGKLTGM+FRVPT +VSVVDLT R+ K ASY+ +K+AIK ASEG LKGI+GY +ED+VS DFVGDSRSSIFDAKAGI L+ +F+KLV+WYD EWGYSNRV+DLI HMA
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.291e-57
Identity = 108/139 (77.70%), Postives = 122/139 (87.77%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGR  S NII SSTGAAKAVGKVLPDLNGKLTGM+FRVPT +VSVVDLT R+ K ASY+ +K+AIK ASEG LKGI+GY +ED+VS DFVGDSRSSIFDAKAGI L+ +F+KLV+WYD EWGYSNRV+DLI HMA
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.217e-57
Identity = 109/139 (78.42%), Postives = 120/139 (86.33%), Query Frame = -1
Query:  307 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHMA 723
            KDWRGGR  S NII SSTGAAKAVGKVLP+LNGKLTGM+FRVPT +VSVVDLT R  K ASY+D+K AIK ASEG LKGI+GY +ED+VS DFVGDSRSSIFDAKAGI L+  F+KLVSWYD EWGYSNRV+DLI HMA
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTVDVSVVDLTVRTEKAASYDDIKKAIKAASEGKLKGIMGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMA 334          
BLAST of CB290352 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.073e-56
Identity = 108/138 (78.26%), Postives = 120/138 (86.96%), Query Frame = -1
Query:  310 KDWRGGRGVSQNIILSSTGAAKAVGKVLPDLNGKLTGMAFRVPTPNVSVVDLTCRLAKGASYEDVKAAIKYASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDTEWGYSNRVLDLIEHM 723
            KDWRGGR  S NII SSTGAAKAVGKVLP+LNGKLTGM+FRVPT +VSVVDLT R+ KGASYE++K AIK ASEG LKGI+GY +ED+VS DF GDSRSSIFDAKAGI L+  F+KLVSWYD EWGYSNRV+DLI HM
Sbjct:  196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHM 333          
The following BLAST results are available for this feature:
BLAST of CB290352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3PC_PETCR2.554e-5878.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI4.357e-5879.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL4.357e-5880.58Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC7.432e-5880.28Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE9.706e-5879.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY6.291e-5778.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ6.291e-5777.70Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI6.291e-5777.70Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU8.217e-5778.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE1.073e-5678.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290352 ID=CB290352; Name=CB290352; organism=Citrus sinensis; type=EST; length=723bp
TAAGCAGGGTTGATGGTTGCATACACCTTATGGTAAAATGGGGTTCATTA
TGTAGATGACTAGGATGCCCAGAATCCAAACAAAGATGGTAGTAGTGGAA
TGAACTCCATACACTTTGAATATTCTATTCCATTATTTTAAAATTTGCAT
CAAGGGATGTCCAAAGTTCATATTGCGAGTCACTCAGAACAAAACGCAGA
ATCACTATCAAATTTTTAACTACTCTTTCAATCTAACCCAAAAGCATGCA
CTAAAATTGCAGCAGCAGCAAACCAATTTTACTGTTTAGTTGTGGGCCGC
TACCAATGCCATGTGCTCGATGAGGTCCAACACTCGATTGCTGTATCCCC
ACTCGGTGTCATACCATGACACAAGCTTCATGAAGGATGCACTCAATCCA
ATCCCAGCCTTCGCATCAAATATACTTGACCTCGAGTCTCCAACAAAGTC
ATTAGAGACAACATCCTCATCTGTGTATCCAAGAATGCCTTTCAGTGAAC
CCTCCGATGCATACTTTATGGCGGCTTTGACATCTTCATAGGAAGCACCC
TTTGCAAGTCGACAAGTCAAGTCCACAACAGACACATTAGGAGTTGGGAC
ACGGAAGGCCATGCCAGTAAGCTTTCCGTTGAGATCTGGAAGAACTTTAC
CAACAGCCTTGGCAGCACCAGTTGAACTAAGAATGATATTTTGTGAAACT
CCACGCCCTCCTCTCCAATCCTT
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