CB290365

Overview
NameCB290365
Unique NameCB290365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290365_ssr78 microsatellite CB290365_ssr78:78..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CB290365 vs. ExPASy Swiss-Prot
Match: LANC2_MOUSE (LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 2 
Query:  335 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-STRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLE-----IAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTL 721
            D + YTG  G A + L+ Y +TG+Q  LL S   +D     +R+ S R VTFLCG  G  A+GAV+ +++         +   L+     + QE  LP            +LLYGRAG+L+A L++N  +G GT+
Sbjct:   99 DCSAYTGWTGIALLYLQLYRVTGDQTYLLRS---LDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPD-----------ELLYGRAGYLYALLYLNTEIGPGTV 219
The following BLAST results are available for this feature:
BLAST of CB290365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LANC2_MOUSE3.614e-1235.56LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290365 ID=CB290365; Name=CB290365; organism=Citrus sinensis; type=EST; length=726bp
GGCGAGACCGATTACTGAAGTGCAAAACAAAACAAACATCGAAATAAACT
ACACGACATTTCATTTCAGAAAAAAAAAATAATAATAATAATACATAAAC
TACATGTCTTCAGTAAAGTTTGCTTCTCAGGACAGCCATGCCCATGAAGA
TAATAACAACGGCGAACGCCACGATTTGCTTCATCACGACAGCATCGTCG
ATCCAACGGCCGCCATTAACATGTCCCTTCCATGTGAAACTTTTCTGAAA
GCTGCCGTGTCTCTTAAAGACCAGGTGGTGGAGGTGACCTGGCGGAGAGG
TTCTGGTGGTGGGGGCGAACCGGGTAGGGGGATGGACCCGACTCTTTATA
CGGGTCTGTTGGGCACAGCTTTCATCTGCTTGAGGTCGTACGAGTTAACT
GGTAACCAGCAGGAACTGCTATTGTCCGCAGAGATTATTGACACGTGTGC
TTCTGTCGTGCGTGACTCCACCAGGCACGTGACATTTTTATGTGGTAGAG
GAGGGATTTACGCAATAGGTGCCGTGGTGGCTAACCGCATGGGAGACCGT
TCAAGGCGAGATTTCTTCTTGAATCTCTTTCTTGAGATAGCACAAGAGAG
AGCCCTCCCAGCTGGACCAGAAGAAGGCGGATTCGGAATGTCTTATGATC
TCCTTTATGGTCGAGCTGGATTTTTATGGGCTGCTTTGTTCGTAAACAAG
CATCTCGGGGCAGGGACATTGCCTAA
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