CB290372

Overview
NameCB290372
Unique NameCB290372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: SAS10_RAT (Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.641e-17
Identity = 59/190 (31.05%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   99 DFGLQDAGDSEDNEDESDKGLTLEEISIKGKSTTKP---------WASKEA-----VDDAVTSYEEVKKDLNALSKEEQMDVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEIL 626
            D+G +  G     E E ++    EE  +  +  T+          W    A     VD+A T    V KDL  +S +E++ ++   +PEL+ L+ +L   L +++ ++ PL+  V++  I    G +YL+ K  L L YC  I+FYL+LK+   P   HPVI RLV  + L++K+  +D+ L SE+  +L
Sbjct:  136 DYGSKSRGRQSQQEVEEEEREEEEEAQVIQRRLTQALQEDDFGVAWVEAFAKPVPQVDEAET---RVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLL 322          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: SAS10_MOUSE (Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.641e-17
Identity = 60/190 (31.58%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   99 DFGLQDAGDSEDNEDESDKGLTLEEISIKGKSTTKP---------WASKEA-----VDDAVTSYEEVKKDLNALSKEEQMDVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEIL 626
            D+G +  G     E E ++    EE  I  +   +          W    A     VD+A T    V KDL  +S +E++ ++   +PEL+ L+ +L   L +++ ++ PLL  V++  I    G  YL+ K  L L YC  I+FYL+LK+   P   HPVI RLV  + L++K+  +D+ L SE+  +L
Sbjct:  136 DYGSKSRGRQSQQEVEEEEREEEEEAQIIQRRLAQALQEDDFGVAWVEAFAKPVPQVDEAET---RVVKDLAKVSVKEKLKMLKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLL 322          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: SAS10_HUMAN (Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.450e-17
Identity = 60/190 (31.58%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   99 DFGLQDAGDSEDNEDESDKGLTLEEISIKGKSTTKP---------WASKEA-----VDDAVTSYEEVKKDLNALSKEEQMDVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEIL 626
            D+G +  G     E E ++    EE  I  +   +          W    A     VD+A T    V KDL  +S +E++ ++   +PEL+ L+ +L   L +++ ++ PLL  V++  I    G +YL  K  L L YC  I+FYL+LK+   P   HPVI RLV  + L++K+  +D+ L SE+  +L
Sbjct:  140 DYGSKSRGRQSQQEAEEEEREEEEEAQIIQRRLAQALQEDDFGVAWVEAFAKPVPQVDEAET---RVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLL 326          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: SAS10_DROME (Something about silencing protein 10 OS=Drosophila melanogaster GN=Sas10 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.449e-15
Identity = 44/155 (28.39%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  228 DDAVTSYEEVKKDLNALSKEEQMDVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIK-QLDENLPSELDEILK--NDHSAEIAAKLVRENAKM 683
            D+ ++   +V  DL  LS+ E+  +++S +PE + L  +    L++++  + P+LN V++ ++ +   ++Y  +   +L  YC  + FYLLLK+    V+ HPVI RLV++K L++++K + +E +  +L+ +L+   D  A     + +  AK+
Sbjct:  154 DNELSHITKVTSDLAGLSERERRQLMHSESPEFIILTQDFQQHLDEVKNLLKPVLNYVRKHDVPMVPALQYAGLCHTVLTTYCSNVAFYLLLKARRIDVKAHPVIRRLVQLKDLIEELKPRYEEYIRPQLEALLERIEDGDAFTVLDVAQRKAKL 308          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: NGDN_DANRE (Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.155e-13
Identity = 38/111 (34.23%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  297 DVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEILK 629
            DV+    P  V LL+ L + +  +   V  L+ KV+E+      G+ +L+++  LLL Y Q IT  + LK+EGE ++D+  I RLV I+ +L+K++ LD+ L  ++D++++
Sbjct:    9 DVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVR 119          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: NGDNB_XENLA (Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-B PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.148e-12
Identity = 36/111 (32.43%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  297 DVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEILK 629
            DV+    P  V L + L D + ++   V  L  KV+      + G+ +LE+K  LLL Y Q +T  +L K+ G+ ++ +P I RLVE++ +L+K++ +D+ L  ++D+++K
Sbjct:    5 DVILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVK 115          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: NGDN_BOVIN (Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.500e-12
Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  297 DVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEILK 629
            +V+ S  P  V LL  L + +  +  +V  L  KV+ +    E G+  LEVK  LLL Y   ++  +L K+ G  ++ HP + RLVEI+ +L+K++ LD+ L  ++D+++K
Sbjct:    5 EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVK 115          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: NGDNA_XENLA (Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.959e-12
Identity = 36/111 (32.43%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  297 DVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEILK 629
            DV+    P  V L + L D + ++   V  L  KV+      + G+ +LE+K  LLL Y Q +T  +L K+ G+ ++ +P I RLVE++ +L+K++ +D+ L  ++D+++K
Sbjct:    6 DVILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVK 116          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: NGDN_HUMAN (Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  294 MDVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEILK 629
            + V+ S  P  V LL  L + +  +  +V  L  KV+      E G+ +LEVK  LLL Y   +T  +L K+ G  ++ H  + RLVEI+ +L+K++ LD+ L  ++D+++K
Sbjct:    4 LGVLESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIK 115          
BLAST of CB290372 vs. ExPASy Swiss-Prot
Match: NGDN_MOUSE (Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 35/111 (31.53%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  297 DVVYSSAPELVGLLSELNDALEQLEIKVNPLLNKVKEQEIMLEGGMRYLEVKQLLLLAYCQAITFYLLLKSEGEPVRDHPVIARLVEIKGLLDKIKQLDENLPSELDEILK 629
            +V+ S     + LL  L + +  +  ++  L  KV+      E G+ +LEVK  LLL Y   ++  +L K+ G  ++ HP + RLVEI+ +L+K++ LD+ L  ++D+++K
Sbjct:    5 EVLESDVSSSITLLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVK 115          
The following BLAST results are available for this feature:
BLAST of CB290372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SAS10_RAT2.641e-1731.05Something about silencing protein 10 OS=Rattus nor... [more]
SAS10_MOUSE2.641e-1731.58Something about silencing protein 10 OS=Mus muscul... [more]
SAS10_HUMAN3.450e-1731.58Something about silencing protein 10 OS=Homo sapie... [more]
SAS10_DROME1.449e-1528.39Something about silencing protein 10 OS=Drosophila... [more]
NGDN_DANRE5.155e-1334.23Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1[more]
NGDNB_XENLA1.148e-1232.43Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn... [more]
NGDN_BOVIN1.500e-1234.23Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1[more]
NGDNA_XENLA1.959e-1232.43Neuroguidin-A OS=Xenopus laevis GN=ngdn-A PE=1 SV=... [more]
NGDN_HUMAN5.700e-1233.93Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1[more]
NGDN_MOUSE1.270e-1131.53Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290372 ID=CB290372; Name=CB290372; organism=Citrus sinensis; type=EST; length=809bp
GCACGTGGCTGCAATCAAGTGATGATGATTCCCCTGCTTTACAGGAACAA
TTGGTGGTAGAGGAGCTGGAAAAAAGAGCAACCTCTTTAGCAATGGAAGA
TTTTGGCCTTCAAGACGCTGGAGATAGTGAAGATAATGAAGATGAGAGTG
ACAAGGGATTAACCTTAGAAGAAATCTCGATTAAAGGGAAAAGTACAACA
AAGCCTTGGGCAAGCAAAGAAGCTGTAGATGATGCTGTTACAAGTTATGA
GGAGGTCAAGAAAGACTTGAATGCATTGTCAAAGGAGGAGCAAATGGATG
TGGTATACAGTTCTGCTCCAGAGTTGGTTGGTTTGCTGTCAGAACTGAAT
GATGCGCTTGAACAGCTTGAAATAAAAGTTAACCCGTTGTTAAACAAGGT
GAAAGAGCAGGAGATCATGCTGGAAGGTGGGATGCGCTATTTGGAGGTGA
AGCAACTTCTACTGCTGGCCTATTGCCAAGCCATAACCTTTTATCTTCTT
CTCAAGTCTGAAGGGGAGCCAGTTCGTGATCATCCTGTCATAGCTCGCCT
TGTAGAGATCAAGGGATTGCTGGATAAGATTAAACAACTCGATGAGAATC
TTCCATCTGAGTTAGATGAGATTTTGAAGAATGACCATTCAGCTGAAATT
GCGGCAAAGTTGGTTAGAGAGAATGCTAAAATGGCATCCAATTCTGCTGC
TGATAATCATCACAATTCATCTTCTGTCTCAGCTGATACAGATCATGGAG
CAGCGGCTTTAGATGTAAATGAATTGAAAATGGAGGACATTTTGAGGGAT
CATGATGAT
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