CB290379

Overview
NameCB290379
Unique NameCB290379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig129 contig Csv1_Contig129:181..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = -3
Query:  663 QPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 836
            QPQYCC GA+ TPDTC P+ +S++FK+ CP AYSYAYDDKSSTFTC  GP+Y ITFCP
Sbjct:  187 QPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFCP 244          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F QPQYCC GAF T  TC  + YS+IFK  CP AYSYAYDD +STFTC   PDY ITFCP
Sbjct:  184 FNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFCP 243          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F  PQYCC    +TP+TC P+ YS+IF +ACP AYSYAYDDK  TFTC  GP+Y ITFCP
Sbjct:  186 FGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 245          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F   +YCC    +TP+TC P+ YS+IF+  CP AYSYAYDDK+STFTC  GPDY ITFCP
Sbjct:  187 FGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 246          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F   +YCC     TP+TC P+ YS+IF+  CP AYSYAYDDK+STFTC  GPDY ITFCP
Sbjct:  153 FGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.309e-18
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F QP+YCC      P+TC P  YS++FK+ CP AYSYAYDDKSSTFTC   P Y ITFCP
Sbjct:  187 FNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFCP 246          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F   QYCC GA   P+TC P+ YS+IFK+ACP AYSYAYDD++STFTC +G +Y ITFCP
Sbjct:  181 FNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTC-TGANYEITFCP 239          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.390e-16
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F  PQYCC G F  P +CKP+ YS+IFK ACP AYSYAYDD +S  TC S  +Y +TFCP
Sbjct:  181 FNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATC-SKANYIVTFCP 239          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.899e-16
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F +PQYCC     T + C P+ YSQIF   CP AYSYA+DD    FTC  GP+Y ITFCP
Sbjct:  183 FGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFCP 242          
BLAST of CB290379 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.218e-12
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  663 FRQPQYCCNGAFSTPDTCKPSTYSQIFKSACPHAYSYAYDDKSSTFTCGSGPDYTITFCP 842
            F+  QYCC  A+   D C  + YS+IFK+ CP AYSYA DD ++TF C SG DY+I FCP
Sbjct:  169 FKTDQYCCRNAYV--DNCPATNYSKIFKNQCPQAYSYAKDD-TATFACASGTDYSIVFCP 225          
The following BLAST results are available for this feature:
BLAST of CB290379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TLP1_PYRPY3.777e-2272.41Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLP1_CASSA2.707e-2068.33Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP_PRUAV2.291e-1965.00Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1A_MALDO6.667e-1963.33Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TP1B_MALDO8.707e-1963.33Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_PRUPE3.309e-1863.33Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
PR5_ARATH9.627e-1865.00Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLPH_ARATH1.390e-1661.67Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLP2_PRUPE6.899e-1656.67Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
PRR3_JUNAS1.218e-1255.00Pathogenesis-related protein OS=Juniperus ashei PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bb03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290379 ID=CB290379; Name=CB290379; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTTTTAAAAAAAATCATTTATTGGATACCCAATGAGCGGT
GGTTACATGTAAGGAGAAGAACCAACAAATGAATAATAAATCCTACTCCC
CTACTCCAATAATAATATATAAAACTCATTGCATATTCAAAAAAAAAAAA
CTAATAATCCTAAATTCTAAAATAATAAATCCTATTTCCCCCCTTTTTCG
TTTTTGGCGTTTGGCCCCAAAGTAGGCATCAATTATCAACGGGTGAGCTT
TTCCATCACCACAGACTTTAAGGTGGCATGGCCCAGGCATCGAAGAATTA
TCTATTACAACAACGGTAGAGGGTCCACACTCGAAACGACAAGGCAACCT
CCGTTTCCAGGCCAAAAAGTTGTATGGGTAATGTATTTTTCTGTATGATT
GTATGCCCGTGGGCCTATCCTAAGTTAGTGAATATCGAAGAAATTAAAAG
AGTTGCCATGCCCTCCAGACGGCGAATGTGATGCTGACTATACCCGCAAT
GCCATTGCCATGCGATCCCAGCACGTAGGTATACGTGGAAGGTGACGCGC
TGCTTTGGTCCAACGCACCTTCGTACACCATTGTGCTATCGATGGTCCCT
GTGTTGGGCGCATTGCTTCCACTGTTTCCACCTTGTGAGGATTTCTGGCT
GGTGTTGGGGGAAGGACAGAAGGTTATGGTGTAGTCGGGCCCCGAACCGC
ATGTAAAGGTGCTGGATTTGTCATCGTACGCATAGCTGTAAGCGTGAGGA
CACGCGCTTTTGAAGATCTGAGAATAAGTAGATGGCTTGCATGTATCGGG
AGTACTAAACGCGCCATTACAACAGTACTGCGGCTGCCTAAAGG
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