CB290397

Overview
NameCB290397
Unique NameCB290397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290397_ssr182 microsatellite CB290397_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:24..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 2.745e-135
Identity = 235/240 (97.92%), Postives = 235/240 (97.92%), Query Frame = 2
Query:   29 MTRLPSRVLITLLVALAGIADGSRDIAGPILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            MTRL S VLITLLVALAGIADGSRDIAG ILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATT
Sbjct:    1 MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATT 240          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 3.745e-100
Identity = 180/242 (74.38%), Postives = 203/242 (83.88%), Query Frame = 2
Query:   26 TMTRLP-SRVLITLLVALAGIADGSRDIAGPILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            TMTR+    VL  LLV+L  ++  +R     ++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAV+LG+KTA+ GGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLPEGLNIYATT
Sbjct:    4 TMTRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYATT 239          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.272e-97
Identity = 167/239 (69.87%), Postives = 195/239 (81.59%), Query Frame = 2
Query:   32 TRLPSRVLITLLVALAGIADGSRDIAGPILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            ++L + +  T++V    +    RD+ G  L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ+D+CHAYQLLRKGG K+ENIIVFMYDDIA NEENPRPGVIIN P GDDVY GVPKDYTG +V  +NF+A +LGNK+ALTGGSGKVVDSGPNDHIF++Y+DHGGPGVLGMP   Y+YA +L +VLKKKHASG YKSLVFYLEACESGSIFEGLLP+ LNIYATT
Sbjct:    4 SQLSTLLFFTIVVTFLTVVSSGRDLPGDYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPDDLNIYATT 236          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.010e-94
Identity = 167/239 (69.87%), Postives = 191/239 (79.92%), Query Frame = 2
Query:   32 TRLPSRVLITLLVALAGIADGSRDIAGPILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            T   + +L  LL+ L  +    RD+ G  L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFN ENPR GVIIN P+GD+VYKGVPKDYTGEDVT  NF+A +LG+K+ LTGGSGKVV+SGPNDHIFIFYSDHGGPGVLG P   YIYA +L +VLKKKHASG YK+LVFYLEACESGSIFEGLLPE +N+YATT
Sbjct:    4 TTATTSLLALLLLFLVALVSAGRDLVGDFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAALLGDKSKLTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGSPAGPYIYASDLNEVLKKKHASGTYKNLVFYLEACESGSIFEGLLPEDINVYATT 229          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 343.199 bits (879), Expect = 8.934e-94
Identity = 163/215 (75.81%), Postives = 189/215 (87.91%), Query Frame = 2
Query:  104 IAGPILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            ++G ++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQAD+CHAYQLL+KGG+K+ENI+VFMYDDIA NEENPRPGVIIN P+G+DVY GVPKDYTG++V V+N  AV+LGNKTAL GGSGKVVDSGPNDHIFI+YSDHGGPGVLGMPTS  +YA++L DVLKKK+ASG YKSLVFYLEACESGSIFEGLLPEGLNIYATT
Sbjct:   18 VSGDVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIFEGLLPEGLNIYATT 224          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.095e-83
Identity = 142/189 (75.13%), Postives = 166/189 (87.83%), Query Frame = 2
Query:  182 DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            DDDD +GTRWAVL+AGS GF NYRHQAD+CHAYQLLRKGGLK+ENIIVFMYDDIA NE NPRPGVIINHP G+DVY GVPKDYTGE VT +N +AV+LG+K+A+ GGSGKVVDS PND IF++YSDHGGPGVLGMP   Y+YA + I+VLKKKHA+G YK +V Y+EACESGSIFEG++P+ ++IY TT
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSGKVVDSKPNDRIFLYYSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEACESGSIFEGIMPKDVDIYVTT 242          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.430e-83
Identity = 140/187 (74.87%), Postives = 163/187 (87.17%), Query Frame = 2
Query:  188 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            DD VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA+N  NPRPGVIINHP G DVY GVPKDYTGEDVT EN +AV+LG+K+ + GGSGKV++S P D IFIFYSDHGGPGVLGMP + ++YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TT
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVILGDKSKVKGGSGKVINSNPEDRIFIFYSDHGGPGVLGMPNAPFVYAMDFIDVLKKKHASGGYKEMVIYIEACESGSIFEGIMPKDLNIYVTT 220          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.433e-83
Identity = 146/233 (62.66%), Postives = 180/233 (77.25%), Query Frame = 2
Query:   50 VLITLLVALAGIADGSRDIAGPILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            +++ L+      A  +R     ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGGLK+ENI+VFMYDDIA NE NPR GVIINHP G+D+Y GVPKDYTG++VT EN FAV+LG+K+ L GGSGKV++S P D IFI+YSDHGGPG+LGMP   Y+YA + IDVLKKKHASG+YK +V Y+EACESGS+FEG++P+ LNIY TT
Sbjct:   20 MMVVLVRVHGAAARPNRKEWDSVIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKGGSGKVINSKPEDRIFIYYSDHGGPGILGMPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVFEGIMPKDLNIYVTT 240          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.893e-81
Identity = 141/211 (66.82%), Postives = 171/211 (81.04%), Query Frame = 2
Query:  116 ILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA +E NPRPGVIIN+P G DVY GVPKDYTGE VT  NFFAV+LG+K+ + GGSGKV++S P D IF++YSDHGGPGVLGMP   Y+YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TT
Sbjct:   40 VIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVLLGDKSKVKGGSGKVINSKPEDRIFVYYSDHGGPGVLGMPNMPYLYAMDFIDVLKKKHASGGYKEMVIYVEACESGSIFEGIMPKDLNIYVTT 238          
BLAST of CB290397 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 298.13 bits (762), Expect = 3.296e-80
Identity = 133/190 (70.00%), Postives = 162/190 (85.26%), Query Frame = 2
Query:  179 NDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 748
            + D+D VGTRWAVL+AGS+G+ NYRHQAD+CHAYQ+LRKGGLK+ENI+V MYDDIA +  NPRPG +INHP GDDVY GVPKDYTG  VT  NF+AV+LG++ A+ GGSGKV+ S PNDHIF++Y+DHGGPGVLGMP + +IYA + I+ LKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TT
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYADHGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMPKDLNIYVTT 231          
The following BLAST results are available for this feature:
BLAST of CB290397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
VPE_CITSI2.745e-13597.92Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPEG_ARATH3.745e-10074.38Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE_VICSA2.272e-9769.87Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPE1_PHAVU4.010e-9469.87Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEA_ARATH8.934e-9475.81Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_RICCO1.095e-8375.13Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
LEGU_CANEN1.430e-8374.87Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE_SOYBN5.433e-8362.66Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
VPE2_PHAVU3.893e-8166.82Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEB_ARATH3.296e-8070.00Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290397 ID=CB290397; Name=CB290397; organism=Citrus sinensis; type=EST; length=749bp
GTCCGTAAAGGAACCCCCTTNAAAAACCATGACGCGCCTTCCTTCAAGAG
TGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCAGA
GACATAGCAGGTCCCATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTT
CCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCG
GCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTAC
AGGCATCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTGG
GCTGAAGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTCA
ATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCGAT
GATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACTGT
TGAAAACTTTTTTGCTGTTGTCCTGGGAAATAAAACAGCTCTTACAGGGG
GCAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATATTC
TACTCAGATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGATA
CATATATGCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATGCTTCTG
GGAACTACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATCTGGAAGT
ATCTTTGAGGGTCTTCTTCCTGAGGGCTTAAATATCTATGCAACCACAG
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