CB290400

Overview
NameCB290400
Unique NameCB290400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290400_ssr394 microsatellite CB290400_ssr394:394..405. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH11_ARATH (Probable S-acyltransferase At3g51390 OS=Arabidopsis thaliana GN=At3g51390 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.377e-78
Identity = 136/233 (58.37%), Postives = 161/233 (69.10%), Query Frame = -1
Query:  147 TSKQPGSSKNGNMVITMEGSRPGRSFSGSNATSWTKLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCCVKASVYNLERLPTAQEIEEKSRPYTCLDFLTCRCC 845
            TS Q  S K+ ++V+ +EG     S      T W KLVLDLYPPGTSIR+LTC YC+VEQPPR KHCHDCDRCVLQFDHHCVWLGTC+G  NH +FWWYICEET LC+WT ++YV YL +N+A  WWK+                            LTNQ+TYELVRRRRIPY+R IP RV+PFS G+ RNLY +CC     YNL+ LPTA E+E++SRPYTC+D L CRCC
Sbjct:  114 TSIQHASRKSESVVVNVEGG--SASCPRRPPTPWGKLVLDLYPPGTSIRNLTCGYCHVEQPPRTKHCHDCDRCVLQFDHHCVWLGTCIGQKNHSKFWWYICEETTLCIWTLIMYVDYL-SNVAKPWWKNAIIILLLVILAISLIFVLLLLIFHSYLILTNQSTYELVRRRRIPYMRNIPGRVHPFSRGIRRNLYNVCC---GNYNLDSLPTAFELEDRSRPYTCIDMLKCRCC 340          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH12_HUMAN (Probable palmitoyltransferase ZDHHC12 OS=Homo sapiens GN=ZDHHC12 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.116e-16
Identity = 62/185 (33.51%), Postives = 80/185 (43.24%), Query Frame = -1
Query:  183 LYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAW--W--KDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCCVKASVYNLERLPTAQEIEEKSRP 725
            + PP   +R   C YC V QP RA+HC +C RCV ++DHHC W+  CVG  NH  F  Y+  +  + LW   LY+A+        W  W                                 +N TT+E +   RI YLR  P    PF  G+ RNL    C   S  + E L  A+E EE S P
Sbjct:   89 MVPPAIPLRR--CRYCLVLQPLRARHCRECRRCVRRYDHHCPWMENCVGERNHPLFVVYLALQLVVLLWG--LYLAWSGLRFFQPWGQWLRSSGLLFATFLLLSLFSLVASLLLVSHLYLVASNTTTWEFISSHRIAYLRQRPSN--PFDRGLTRNLAHFFCGWPS-GSWETL-WAEEEEEGSSP 265          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC7_DICDI (Putative ZDHHC-type palmitoyltransferase 7 OS=Dictyostelium discoideum GN=DDB_G0276017 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = -1
Query:  261 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWY-ICEETALCLWTGVLYVAYLKANIALAW-WKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPER-VYPFSDGVCRNLYK 689
            C  C V+ P R KHC  C+RCVL++DHHCV++G CVGL NH  F  + + E   L L   ++   +++ N    W + ++                           LTNQ+++E  + +RI YL+   +R + PF+ G   NL K
Sbjct:  251 CKKCLVDIPLRTKHCVKCNRCVLKYDHHCVFIGGCVGLNNHKNFLLFLLAESLLLLLGLRIIVTGFVRENSIKEWIFSNIAIIPPTLLIFGGLCMPFALFCFHSFLILTNQSSWEFNKYQRITYLKPFSKRGINPFNKGPWNNLKK 396          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH10_ARATH (Probable S-acyltransferase At3g48760 OS=Arabidopsis thaliana GN=At3g48760 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 48/171 (28.07%), Postives = 73/171 (42.69%), Query Frame = -1
Query:  237 DLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLK-------ANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCCVKASV 728
            D+   G +++   C  C + +PPRA HC  C+ CV +FDHHC WLG C+GL N+  ++ ++   T LC++  V    Y+K        NI  ++ K                              TNQ+TYE  R R             PF+ G+  N  ++ C   +V
Sbjct:  147 DMIVNGITVKIKYCDTCMLYRPPRASHCSICNNCVEKFDHHCPWLGQCIGLRNYRFYFMFVLCSTLLCIYVHVFCWIYVKRIMDSENINIWKSFLKTPASIALIIYTFICVWFVGGLTCFHLYLMSTNQSTYENFRYR-------YDRHENPFNKGIVGNFMEVFCTNVAV 310          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH19_ARATH (Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 46/147 (31.29%), Postives = 64/147 (43.54%), Query Frame = -1
Query:  309 GTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLK-------ANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVR-----RRRIPYLRGIP 713
            G S+R   C  C + +PPR  HC  C+ CV +FDHHC W+G C+GL N+  F+ ++   T LC++   +   Y+K       A +  A  +                              TNQTTYE +R      R I Y RG P
Sbjct:  130 GVSVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSSTLLCIYIFSMSAVYIKILMDHQQATVWRAMKESPWAVVLMIYCFIALWFVGGLTAFHLYLISTNQTTYEKLRYRSSHSRSIVYNRGCP 276          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDHC4_ARATH (Probable S-acyltransferase At2g40990 OS=Arabidopsis thaliana GN=At2g40990 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 48/161 (29.81%), Postives = 74/161 (45.96%), Query Frame = -1
Query:  258 DLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVL-YVAYLKAN---IALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKL 728
            D+   G +++   C  C + +PPRA HC  C+ CV +FDHHC W+G C+ L N+  F  +I   T LCL+  V  +V+ L+ +   + +    D+                            TNQTTYE  R R         ++  P+  G+ +NLY+L
Sbjct:  124 DILVNGYTVKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIALRNYPYFICFISTSTLLCLYVFVFSWVSMLEVHGKMLLMVITNDLVFVVLILYCFVVVWFVGGLTVFHLYLICTNQTTYENFRYR-------YDKKENPYGKGLFKNLYEL 277          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH13_ARATH (Probable S-acyltransferase At3g56930 OS=Arabidopsis thaliana GN=At3g56930 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = -1
Query:  258 VLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYL---------KANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKL 734
            V D+   G +++   C  C + +PPRA HC  C+ CV +FDHHC W+G C+G+ N+  F+ +I   T LC++  V   ++L         K +I  A  KDV                            TNQTTYE  R R         ++  P++ G+  N++++
Sbjct:  133 VKDVTVNGHTVKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGVRNYRFFFMFISTSTTLCIY--VFAFSWLNIFQRHMDEKISIWKAISKDVLSDILIVYCFITVWFVGGLTIFHSYLICTNQTTYENFRYR-------YDKKENPYNKGILGNIWEI 291          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH17_MOUSE (Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zdhhc17 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = -1
Query:  459 KLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWWKD 740
            K +++L   G+   S+ CS C + +P R+KHC  C+RC+ +FDHHC W+G CVG GNH  F  Y+     +  W     V+Y   +    + KD
Sbjct:  422 KTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCVSYWGLHCETTYTKD 515          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH17_HUMAN (Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = -1
Query:  459 KLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWWKD 740
            K +++L   G+   S+ CS C + +P R+KHC  C+RC+ +FDHHC W+G CVG GNH  F  Y+     +  W     ++Y   +    + KD
Sbjct:  422 KTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHCETTYTKD 515          
BLAST of CB290400 vs. ExPASy Swiss-Prot
Match: ZDH12_RAT (Probable palmitoyltransferase ZDHHC12 OS=Rattus norvegicus GN=Zdhhc12 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 49/150 (32.67%), Postives = 61/150 (40.67%), Query Frame = -1
Query:  252 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAW--W--KDVXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCC 689
            C YC V QP RA+HC +C RCV ++DHHC W+  CVG  NH  F  Y+  +  + LW   LY+A+        W  W                                  N TT+E +   RI YLR       PF  G  RNL    C
Sbjct:   99 CRYCLVLQPLRARHCRECRRCVRRYDHHCPWMENCVGERNHPLFVAYLALQLVVLLWG--LYLAWSGLQFFQPWGLWLRSTGLLFTTFLLLSFFALVVSLLLASHLYLVARNTTTWEFISSHRIAYLR--QRTSNPFDRGPTRNLAHFFC 244          
The following BLAST results are available for this feature:
BLAST of CB290400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ZDH11_ARATH6.377e-7858.37Probable S-acyltransferase At3g51390 OS=Arabidopsi... [more]
ZDH12_HUMAN3.116e-1633.51Probable palmitoyltransferase ZDHHC12 OS=Homo sapi... [more]
ZDHC7_DICDI2.020e-1532.19Putative ZDHHC-type palmitoyltransferase 7 OS=Dict... [more]
ZDH10_ARATH3.445e-1528.07Probable S-acyltransferase At3g48760 OS=Arabidopsi... [more]
ZDH19_ARATH4.499e-1531.29Probable S-acyltransferase At4g24630 OS=Arabidopsi... [more]
ZDHC4_ARATH7.674e-1529.81Probable S-acyltransferase At2g40990 OS=Arabidopsi... [more]
ZDH13_ARATH1.710e-1429.17Probable S-acyltransferase At3g56930 OS=Arabidopsi... [more]
ZDH17_MOUSE4.974e-1437.23Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zd... [more]
ZDH17_HUMAN6.497e-1436.17Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZD... [more]
ZDH12_RAT8.485e-1432.67Probable palmitoyltransferase ZDHHC12 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290400 ID=CB290400; Name=CB290400; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTCACAGAACCTTTTGTGTTGCCATAACTTTTAACAAGA
CCAAATGAATGTACAACCATGGGTTTCAACATAACTCACTGTAAAATTTA
GGGGAAAGCACTAAAGTCAATGATACAATGCTCCCTGATGTCAACAGCAG
CAACGACAGGTTAAAAAATCTAAGCATGTGTAAGGTCTAGACTTTTCTTC
AATTTCCTGTGCAGTGGGCAACCTTTCCAAATTGTATACGCTAGCTTTAA
CACAACATAATTTGTAAAGGTTTCTGCAAACTCCATCACTAAAGGGATAC
ACTCGTTCAGGAATCCCCCTCAAATACGGGATGCGTCTACGTCTTACGAG
CTCATAGGTAGTCTGATTTGTCAGGATAAGATAACTATGAAAAAGGAGGA
GGAGGAGCAAAAATATCAAGAAAATTGCCAAAATAATCAGTAGCACAATC
ATGATTACATCCTTCCACCAAGCCAGTGCTATATTAGCCTTCAAGTATGC
AACATACAAGACGCCAGTCCAAAGGCATAGTGCTGTTTCTTCACAAATGT
ACCACCAAAATCGACAATGATTACCCAGGCCAACACATGTTCCCAGCCAA
ACACAATGATGATCAAACTGAAGAACACATCTGTCACAATCATGGCAATG
CTTTGCCCGTGGAGGCTGTTCGACATTACAGTACGAGCAAGTTAAACTTC
TAATGGATGTTCCAGGAGGATACAGGTCCAGGACTAGCTTTGTCCAAGAT
GTTGCATTACTTCCTGAAAAACTTCTTCCTGGCCGACTTCCCTCCATGGT
AATGACCATGTTTCCATTTTTGCTTGAACCCGGCTGTTTTGAGGT
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