CB290401

Overview
NameCB290401
Unique NameCB290401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290401_ssr551 microsatellite CB290401_ssr551:551..562. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH11_ARATH (Probable S-acyltransferase At3g51390 OS=Arabidopsis thaliana GN=At3g51390 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.820e-78
Identity = 136/232 (58.62%), Postives = 163/232 (70.26%), Query Frame = 2
Query:   11 LVQYFITSGSSPGYVLDAMRHANERNALFQKISTTSKQPASSKNGNMVITMEGSRPGRSFSGSNATSWTKLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCC 706
            L+QYF+TSGSSPGYV+DAMR   E +A+++  STTS Q AS K+ ++V+ +EG     S      T W KLVLDLYPPGTSIR+LTC YC+VEQPPR KHCHDCDRCVLQFDHHCVWLGTC+G  NH +FWWYICEET LC+WT ++YV YL +N+A  WWK+                             TNQ+TYELVRRRRIPY+R IP RV+PFS G+ RNLY +CC
Sbjct:   80 LLQYFVTSGSSPGYVVDAMRDVCEASAMYRNPSTTSIQHASRKSESVVVNVEGG--SASCPRRPPTPWGKLVLDLYPPGTSIRNLTCGYCHVEQPPRTKHCHDCDRCVLQFDHHCVWLGTCIGQKNHSKFWWYICEETTLCIWTLIMYVDYL-SNVAKPWWKNAIIILLLVILAISLIFVLLLLIFHSYLILTNQSTYELVRRRRIPYMRNIPGRVHPFSRGIRRNLYNVCC 308          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH12_HUMAN (Probable palmitoyltransferase ZDHHC12 OS=Homo sapiens GN=ZDHHC12 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 53/162 (32.72%), Postives = 69/162 (42.59%), Query Frame = 2
Query:  233 LYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAW--W--KDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCC 706
            + PP   +R   C YC V QP RA+HC +C RCV ++DHHC W+  CVG  NH  F  Y+  +  + LW   LY+A+        W  W                                 +N TT+E +   RI YLR  P    PF  G+ RNL    C
Sbjct:   89 MVPPAIPLRR--CRYCLVLQPLRARHCRECRRCVRRYDHHCPWMENCVGERNHPLFVVYLALQLVVLLWG--LYLAWSGLRFFQPWGQWLRSSGLLFATFLLLSLFSLVASLLLVSHLYLVASNTTTWEFISSHRIAYLRQRPSN--PFDRGLTRNLAHFFC 244          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDHC7_DICDI (Putative ZDHHC-type palmitoyltransferase 7 OS=Dictyostelium discoideum GN=DDB_G0276017 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 46/146 (31.51%), Postives = 71/146 (48.63%), Query Frame = 2
Query:  269 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWY-ICEETALCLWTGVLYVAYLKANIALAW-WKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVRRRRIPYLRGIPER-VYPFSDGVCRNLYK 697
            C  C V+ P R KHC  C+RCVL++DHHCV++G CVGL NH  F  + + E   L L   ++   +++ N    W + ++                            TNQ+++E  + +RI YL+   +R + PF+ G   NL K
Sbjct:  251 CKKCLVDIPLRTKHCVKCNRCVLKYDHHCVFIGGCVGLNNHKNFLLFLLAESLLLLLGLRIIVTGFVRENSIKEWIFSNIAIIPPTLLIFGGLCMPFALFCFHSFLILTNQSSWEFNKYQRITYLKPFSKRGINPFNKGPWNNLKK 396          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDHC4_ARATH (Probable S-acyltransferase At2g40990 OS=Arabidopsis thaliana GN=At2g40990 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 64/230 (27.83%), Postives = 98/230 (42.61%), Query Frame = 2
Query:   23 FITSGSSPGYVLDAMRHANERNALFQKISTTSKQPASSKNGNMVITMEGSRPGRSFSGSNATSWTKLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVL-YVAYLKAN---IALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKL 700
            F+TS   PG ++   + A E   L   + T S +  ++K GN  I                   TK   D+   G +++   C  C + +PPRA HC  C+ CV +FDHHC W+G C+ L N+  F  +I   T LCL+  V  +V+ L+ +   + +    D+                            TNQTTYE  R R         ++  P+  G+ +NLY+L
Sbjct:   78 FLTSSRDPG-IIPRNKEAPEAEGL--DMITQSSEWVNNKLGNTKIPR-----------------TK---DILVNGYTVKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIALRNYPYFICFISTSTLLCLYVFVFSWVSMLEVHGKMLLMVITNDLVFVVLILYCFVVVWFVGGLTVFHLYLICTNQTTYENFRYR-------YDKKENPYGKGLFKNLYEL 277          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH10_ARATH (Probable S-acyltransferase At3g48760 OS=Arabidopsis thaliana GN=At3g48760 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 48/171 (28.07%), Postives = 73/171 (42.69%), Query Frame = 2
Query:  230 DLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLK-------ANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCCVKASV 721
            D+   G +++   C  C + +PPRA HC  C+ CV +FDHHC WLG C+GL N+  ++ ++   T LC++  V    Y+K        NI  ++ K                              TNQ+TYE  R R             PF+ G+  N  ++ C   +V
Sbjct:  147 DMIVNGITVKIKYCDTCMLYRPPRASHCSICNNCVEKFDHHCPWLGQCIGLRNYRFYFMFVLCSTLLCIYVHVFCWIYVKRIMDSENINIWKSFLKTPASIALIIYTFICVWFVGGLTCFHLYLMSTNQSTYENFRYR-------YDRHENPFNKGIVGNFMEVFCTNVAV 310          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH19_ARATH (Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 46/147 (31.29%), Postives = 64/147 (43.54%), Query Frame = 2
Query:  245 GTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLK-------ANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVR-----RRRIPYLRGIP 649
            G S+R   C  C + +PPR  HC  C+ CV +FDHHC W+G C+GL N+  F+ ++   T LC++   +   Y+K       A +  A  +                              TNQTTYE +R      R I Y RG P
Sbjct:  130 GVSVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSSTLLCIYIFSMSAVYIKILMDHQQATVWRAMKESPWAVVLMIYCFIALWFVGGLTAFHLYLISTNQTTYEKLRYRSSHSRSIVYNRGCP 276          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH13_ARATH (Probable S-acyltransferase At3g56930 OS=Arabidopsis thaliana GN=At3g56930 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = 2
Query:  224 VLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYL---------KANIALAWWKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKL 700
            V D+   G +++   C  C + +PPRA HC  C+ CV +FDHHC W+G C+G+ N+  F+ +I   T LC++  V   ++L         K +I  A  KDV                            TNQTTYE  R R         ++  P++ G+  N++++
Sbjct:  133 VKDVTVNGHTVKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGVRNYRFFFMFISTSTTLCIY--VFAFSWLNIFQRHMDEKISIWKAISKDVLSDILIVYCFITVWFVGGLTIFHSYLICTNQTTYENFRYR-------YDKKENPYNKGILGNIWEI 291          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH17_MOUSE (Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zdhhc17 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  218 KLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWWKD 499
            K +++L   G+   S+ CS C + +P R+KHC  C+RC+ +FDHHC W+G CVG GNH  F  Y+     +  W     V+Y   +    + KD
Sbjct:  422 KTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCVSYWGLHCETTYTKD 515          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH17_HUMAN (Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  218 KLVLDLYPPGTSIRSLTCSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAWWKD 499
            K +++L   G+   S+ CS C + +P R+KHC  C+RC+ +FDHHC W+G CVG GNH  F  Y+     +  W     ++Y   +    + KD
Sbjct:  422 KTIVELAETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHCETTYTKD 515          
BLAST of CB290401 vs. ExPASy Swiss-Prot
Match: ZDH12_RAT (Probable palmitoyltransferase ZDHHC12 OS=Rattus norvegicus GN=Zdhhc12 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 49/150 (32.67%), Postives = 61/150 (40.67%), Query Frame = 2
Query:  269 CSYCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGTCVGLGNHCRFWWYICEETALCLWTGVLYVAYLKANIALAW--W--KDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQTTYELVRRRRIPYLRGIPERVYPFSDGVCRNLYKLCC 706
            C YC V QP RA+HC +C RCV ++DHHC W+  CVG  NH  F  Y+  +  + LW   LY+A+        W  W                                  N TT+E +   RI YLR       PF  G  RNL    C
Sbjct:   99 CRYCLVLQPLRARHCRECRRCVRRYDHHCPWMENCVGERNHPLFVAYLALQLVVLLWG--LYLAWSGLQFFQPWGLWLRSTGLLFTTFLLLSFFALVVSLLLASHLYLVARNTTTWEFISSHRIAYLR--QRTSNPFDRGPTRNLAHFFC 244          
The following BLAST results are available for this feature:
BLAST of CB290401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ZDH11_ARATH3.820e-7858.62Probable S-acyltransferase At3g51390 OS=Arabidopsi... [more]
ZDH12_HUMAN3.184e-1632.72Probable palmitoyltransferase ZDHHC12 OS=Homo sapi... [more]
ZDHC7_DICDI1.580e-1531.51Putative ZDHHC-type palmitoyltransferase 7 OS=Dict... [more]
ZDHC4_ARATH2.064e-1527.83Probable S-acyltransferase At2g40990 OS=Arabidopsi... [more]
ZDH10_ARATH2.695e-1528.07Probable S-acyltransferase At3g48760 OS=Arabidopsi... [more]
ZDH19_ARATH3.520e-1531.29Probable S-acyltransferase At4g24630 OS=Arabidopsi... [more]
ZDH13_ARATH1.338e-1429.17Probable S-acyltransferase At3g56930 OS=Arabidopsi... [more]
ZDH17_MOUSE3.892e-1437.23Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zd... [more]
ZDH17_HUMAN5.083e-1436.17Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZD... [more]
ZDH12_RAT6.638e-1432.67Probable palmitoyltransferase ZDHHC12 OS=Rattus no... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290401 ID=CB290401; Name=CB290401; organism=Citrus sinensis; type=EST; length=729bp
GCCCTTGGCTTTGGTGCAATACTTTATAACCTCCGGTTCTTCTCCTGGTT
ATGTACTTGATGCAATGAGACATGCAAACGAGAGAAATGCTTTATTTCAA
AAGATCTCGACAACCTCAAAACAGCCGGCTTCAAGCAAAAATGGAAACAT
GGTCATTACCATGGAGGGAAGTCGGCCAGGAAGAAGTTTTTCAGGAAGTA
ATGCAACATCTTGGACAAAGCTAGTCCTGGACCTGTATCCTCCTGGAACA
TCCATTAGAAGTTTAACTTGCTCGTACTGTAATGTCGAACAGCCTCCACG
GGCAAAGCATTGCCATGATTGTGACAGATGTGTTCTTCAGTTTGATCATC
ATTGTGTTTGGCTGGGAACATGTGTTGGCCTGGGTAATCATTGTCGATTT
TGGTGGTACATTTGTGAAGAAACAGCACTATGCCTTTGGACTGGCGTCTT
GTATGTTGCATACTTGAAGGCTAATATAGCACTGGCTTGGTGGAAGGATG
TAATCATGATTGTGCTACTGATTATTTTGGCAATTTTCTTGATATTTTTG
CTCCTCCTCCTCCTTTTTCATAGTTATCTTATCCTGACAAATCAGACTAC
CTATGAGCTCGTAAGACGTAGACGCATCCCGTATTTGAGGGGGATTCCTG
AACGAGTGTATCCCTTTAGTGATGGAGTTTGCAGAAACCTTTACAAATTA
TGTTGTGTTAAAGCTAGCGTATACAATTT
back to top