CB290402

Overview
NameCB290402
Unique NameCB290402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290402 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 3.077e-107
Identity = 185/219 (84.47%), Postives = 205/219 (93.61%), Query Frame = -2
Query:  212 FSSEEATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKRQRSGRGS 868
            FS+EEATVV +LAS+CLQYEPRERPNTKDLV+TLAPLQ + DVPSYVMLGI + EEAP TPQ PLSP+G+ACSRMDLTAIHQILVMTHY+DDEGTNELSFQEWTQQM+DML+ARKRGD +FREK+FKTA+DCYSQFIDVGTMVSPTV+ RRSLC+L+CDQPDAALRDAMQAQCVYPDW TAFYMQ+VALAKL+M+ DAADML EAA LEEKRQR GRGS
Sbjct:  294 FSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQRGGRGS 512          
BLAST of CB290402 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.144e-62
Identity = 115/212 (54.25%), Postives = 160/212 (75.47%), Query Frame = -2
Query:  233 FSSEEATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 868
            FS +EA VV+ LAS+CL+YE +E PNTK++V+TL  LQ R + PSY ++ +   E+   +  + LSP+G+AC RMDL +IH ILV+  Y DD+   ELSF+EW Q+++++ + R+ GD AF E++FKTA+ CYSQF++  ++V P+VYARRSL +L CD+P+ AL D M AQ V+PDW TAFY+Q+VALAKLDM+ D+AD LKEAA LE K+
Sbjct:  255 FSIDEANVVYKLASQCLKYEGQESPNTKEIVATLETLQTRTEAPSYEVVEMTNQEKDASSSSN-LSPLGEACLRMDLASIHSILVLAGYDDDKDIIELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
BLAST of CB290402 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.401e-59
Identity = 119/213 (55.87%), Postives = 148/213 (69.48%), Query Frame = -2
Query:  233 FSSEEATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEG-TNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 868
            FSS++ T +  LASRCLQYEPRERPN K LVS + PLQ   ++ S+ +LG+P            LSP+G+AC R DLTAIH+I+    YKDDEG T ELSFQ WT QM+D L  +K+GD AFR K+F  A++CYSQFI+VGTM SPTV+AR+SLC+LM D P  AL +AMQAQ + P W  A Y+QAVAL+ L    +A   LK+ A LE KR
Sbjct:  277 FSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQLLGVPNSATTTA-----LSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKR 484          
The following BLAST results are available for this feature:
BLAST of CB290402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH3.077e-10784.47Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH5.144e-6254.25Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y5126_ARATH1.401e-5955.87Probable serine/threonine-protein kinase At5g41260... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290402 ID=CB290402; Name=CB290402; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTTTAATCATTTGAACGAAATTATTAAAAAGCAATAAATA
GCACAACAGACAAGTACAGAACAAGTCTGTCCTCCCTCTATGGTACATTT
TGGAAGAAAACCATATTCCTAATTTCAAATTACATAAAGCCCAAATGCTT
TCTTACAACCACCACAACAATTGATTGAACACAGGCTACAAAAGAATATT
ACAGCTTCTCAAGAACCTCTCCCACTCCGTTGCCTTTTTTCTTCTAATGA
GGCAGCCTCCTTTAACATATCAGCTGCATCCTTGTGCATGTCCAACTTCG
CAAGGGCAACAGCCTGCATGTAAAATGCTGTGGACCAGTCGGGATAAACA
CATTGTGCTTGCATTGCATCTCTAAGTGCAGCATCTGGCTGGTCACACAT
TAAATGACAAAGACTTCTCCGTGCATAGACAGTTGGTGAAACCATGGTTC
CCACGTCTATAAACTGAGAATAGCAATCTACGGCAGTTTTAAATTCTTTC
TCTCGGAATGCCACATCCCCACGCTTTCTAGCCTCCAACATATCTCTCAT
TTGTTGGGTCCACTCTTGAAAAGACAACTCATTGGTTCCTTCATCATCTT
TGTAGTGTGTCATCACCAAGATCTGGTGGATGGCTGTGAGGTCCATCCGT
GAACAAGCATCACCCATTGGAGAAAGAGGGTGCTGTGGAGTAGGAGGTGC
TTCCTCATGCCTTGGAATTCCCAGCATCACATAAGAAGGAACATCAGGTC
TATTTTGTAGGGGAGCAAGTGTAGAAACAAGATCTTTTGTATTTGGCCGC
TCCCTAGGCTCATATTGCAAACACCGTGAAGCAAGATCAAAGACAACTGT
TGCCTCTTCAGATGAAAAG
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