CB290407

Overview
NameCB290407
Unique NameCB290407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5917 contig Csv1_Contig5917:296..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290407 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.016e-83
Identity = 157/185 (84.86%), Postives = 170/185 (91.89%), Query Frame = -3 
Query:  176 MTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVEG*VIFTRYC 730
            M LD+LFEQKGEVAK+VLEELEKVMG YGY+IEHILMVDIIPD +VR+AMNEINAAQR+QLAS+YKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG SAKEVMDLIMITQYFDTIKDLGNSS NTTVF+PHGPGHVRDI +QIRNGLME++ A +       R+C
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMESARAGIN----IERFC 181
The following BLAST results are available for this feature:
BLAST of CB290407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO1.016e-8384.86Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bc08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290407 ID=CB290407; Name=CB290407; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTTTCCACAAAAACATTATAATCCTGTTTATCCTTAT
CGCTTGGCGGCAGGGAAAAACAACTATACAACGAAGTATGAATACCATCC
TATATTATCAGCATCTCTGTAAATTCAATGCAACTTAAGCAATCATATGC
TGTAGAAAGAACTGCAAGAGTATTGACAATAGCGGGTAAAAATCACTCAA
CCCTCTACTTGAGCAGCAGATGCCTCCATCAGCCCATTGCGTATCTGATC
GCTGATATCCCGAACATGACCAGGACCATGGGGTAGAAAGACAGTTGTGT
TATTTGATGAGTTCCCAAGGTCCTTGATTGTGTCAAAGTACTGAGTGATC
ATGATGAGATCCATAACCTCCTTAGCTGAGGCGCCTTCTACCTTATGAGA
GAAGTTCAAAATGTTCTCTCGCAAACCATCTGTTATTGCCTGCCGTTGCC
TGGCCACACCTACGCCACCAAGGTACTTGGCTTCAGCTTCAGCTTCTGCT
CTTTTAACTTGGAGAATCTTCTCAGCTTCCCCTTTATATACACTAGCAAG
CTGAAGCCTTTGAGCCGCATTGATCTCATTCATTGCCTTGCGCACAGCAG
GATCAGGTATAATGTCTACCATCAATATGTGCTCAATGCTATATCCATAT
GCACCCATCACCTTCTCAAGTTCCTCCAAAACAGCCTTAGCAACTTCGCC
TTTTTGTTCAAAGAGCTCATCCAATGTCATTCTTGGAACAAGAGCACGAA
CCACATCAAACACATAAGCCTGGATCTGCTCTTTGGGGTTCTGCAACTCA
TAAAATGCATCATCAGCATTTGCTCTGACAATCCGGTACTGAATTG
back to top