CB290408

Overview
NameCB290408
Unique NameCB290408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:655..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.803e-74
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QISE+LNVQVSDVKNVIIWGNHSS+QYPDVNHATVNT AGEKPVR+LV DDAWLNGEFI+TVQQRGAAIIKARK          ACDHIRDWVLGTP+GT+VSMGVYSDGSYNVP+GLIYSFPVTC NGEW IVQGLSIDEFSRKKLDLTAEEL+EEK
Sbjct:  167 QISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.900e-71
Identity = 130/158 (82.28%), Postives = 141/158 (89.24%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            Q+SE+L+V VSDVKNVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK          ACDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL ID+ SRKK+DLTAEEL EEK
Sbjct:  167 QVSERLSVPVSDVKNVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 3.788e-71
Identity = 131/158 (82.91%), Postives = 138/158 (87.34%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QISE+LNVQVSDVKNVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK          ACDHIRDWVLGTPEGT+VSMGVYSDGSY VP+GLIYSFPVTC  GEW IVQGL IDEFSRKK+D TA+EL+EEK
Sbjct:  167 QISERLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 8.438e-71
Identity = 130/158 (82.28%), Postives = 142/158 (89.87%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QISE+L+V VSDVKNVIIWGNHSSSQYPDVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK          ACDHIRDWVLGTPEGT+VSMGVYSDGSY+VP+GLIYSFPVTCRNG+W+IVQGL IDE SRKK+DLTAEEL EEK
Sbjct:  167 QISERLSVPVSDVKNVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.102e-70
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QISE+LNVQVSDVKNVIIWGNHSS+QYPDVNHATV T   +KPVRELV DDAWLNGEFITTVQQRGAAIIKARK          ACDHI DWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC+NGEWTIVQGL ID+ SRKK+D TA EL EEK
Sbjct:  167 QISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 264.618 bits (675), Expect = 4.188e-70
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QISEKLNVQV+DVKN IIWGNHSS+QYPDVNHATV T +GEKPVRELV DD WLN EFI+TVQQRGAAIIKARK          ACDHIRDWVLGTPEGT+VSMGVYSDGSY VPAGLIYSFPVTC  GEWTIVQGL IDEFSRKK+D TA+ELSEEK
Sbjct:  167 QISEKLNVQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.630e-69
Identity = 128/159 (80.50%), Postives = 135/159 (84.91%), Query Frame = -3
Query:  288 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 764
            QISE+LN QVSDVKNVIIWGNHSSSQYPDVN  TV T +GEK VRELV DDAWLNGEFITTVQQRGAAIIKARK          ACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC++GEW IVQGL IDE SR+K+D T  EL EEKA
Sbjct:  167 QISERLNAQVSDVKNVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKA 325          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 200.675 bits (509), Expect = 7.427e-51
Identity = 102/159 (64.15%), Postives = 119/159 (74.84%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY VP  L+YSFPVT ++  W IV+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  166 QIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 197.593 bits (501), Expect = 6.287e-50
Identity = 99/159 (62.26%), Postives = 117/159 (73.58%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QI+ KL V  +DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEF+TTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  166 QIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CB290408 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 8.211e-50
Identity = 98/159 (61.64%), Postives = 118/159 (74.21%), Query Frame = -3
Query:  291 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 764
            QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG SY +P  L+YSFPVT ++  W +V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  166 QIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEK 324          
The following BLAST results are available for this feature:
BLAST of CB290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MDHC_MEDSA2.803e-7486.08Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH2.900e-7182.28Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_MAIZE3.788e-7182.91Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC1_ARATH8.438e-7182.28Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_MESCR1.102e-7082.28Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_ORYSJ4.188e-7082.28Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_BETVU4.630e-6980.50Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_PIG7.427e-5164.15Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_HUMAN6.287e-5062.26Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDHC_BOVIN8.211e-5061.64Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290408 ID=CB290408; Name=CB290408; organism=Citrus sinensis; type=EST; length=766bp
GTTAAAACAAAAAAAAAATTGTTATTGATAGTTTGATACATAAATCACAA
TGGGCCTTTAATATCCATTTATCCAGGAAAAGTAACAAAACTCCAAAATC
CCGATATTCAAATGCAGAAATAGCAACATAAGATGGAAAGGCTTCTCCAT
CATCAATGGTTCCTCCAGGTTTCAACAATGGTTTTATTCGAAACTGTAAC
TATACCAACTACTCAGACAAAGCTAAGGGCCTTGGTAACACACTATTGAA
GGGAAGAAAGCATTTAAGAGAGACATGAGTATGCGAGGGCCTTCTCCTCG
GAGAGCTCCTCTGCTGTCAAGTCCAACTTCTTCCTTGAGAATTCATCAAT
GCTGAGTCCTTGAACAATTGTCCATTCACCGTTGCGGCAGGTTACTGGGA
ATGAGTAAATGAGCCCAGCTGGTACATTGTATGAACCATCAGAGTATACC
CCCATGGAGACCCAGGTGCCCTCAGGAGTTCCAAGAACCCAATCACGGAT
ATGGTCACAAGCAGAGCTAGCAGCAGACAGAGCACTCGAGAGCTTTCTGG
CTTTGATGATTGCAGCACCACGTTGTTGGACTGTGGTTATGAATTCTCCA
TTCAACCATGCATCATCCTTGACAAGCTCACGGACAGGCTTTTCCCCAGC
TGCAGTATTGACAGTTGCATGGTTGACATCAGGGTACTGAGATGATGAAT
GATTTCCCCAAATAATCACATTCTTAACATCAGATACTTGGACATTCAGT
TTCTCAGATATTTGTC
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