CB290409

Overview
NameCB290409
Unique NameCB290409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:130..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.497e-19
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = -3
Query:  300 MSDPCGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTCG 497
            MSD CGN DCAD++QCVKKGSSY AD +ET+ S ++  VVMD  A E +G CK GP C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = -3
Query:  303 MSDPCGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTC 497
            MSD CGN DCAD SQCVKKG+S   D VETD S++   VVM V A E+ G CK G  C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  297 CGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTCGS 485
            CGN DC D+SQCVKKG+SY  D VET+ S+V  V+V   +A E +G CK G  CAC +C CG+
Sbjct:    4 CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  300 MSDPCGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTCG 497
            MS  C N DCAD +QCVKKG+SY    VET+   +  V V D  A E +G CK G  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = -3
Query:  300 MSDPCGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTCG 497
            MSD CGN DCAD+SQCVKKG+SY    VE + S        +V A E  G CK G  C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = -3
Query:  300 MSDPCGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTCG 497
            MSD CGN DCAD+SQCVKKG+SY    VE + S        +V A E  G CK G  C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = -3
Query:  303 MSDPCGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTC 497
            MS  C N DC+D SQC KKG S+    VET+   +   V+MD  A E  GNCK GP CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMD-TVIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB290409 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = -3
Query:  300 MSDPCGNWDCADRSQCVKKGSSYAADFVETDLSFVSPVVVMDVQAVEAEGNCKWGPPCACVNCTCG 497
            MSD CGN DCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CK    C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CB290409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA1.497e-1963.64Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.713e-1563.08Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC3.816e-1555.56Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_MALDO1.357e-1253.03Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.357e-1251.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.357e-1251.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_PRUAV1.772e-1252.31Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3B_ORYSJ7.447e-1146.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290409 ID=CB290409; Name=CB290409; organism=Citrus sinensis; type=EST; length=574bp
TTTTTTTTTTTTTTTTTGGAGACCAACAATACCCCTTTAAAATTAAACCC
CACAAGGCCACGGGCATGGCCATGGCCATATATTACATGATTATGAAGAA
GGAAACACAAAACATTACGAGTGATGGGGGACACAACACGCACATCACTC
CACACACTAATAGTAAACCATCATAAAAACGAAGTAGAGAATTTTTCTTT
TTTTTTTTAATCACCCTTACATTATTCTTAACCCCCACAATATTTAGGCA
CACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTATTAATGACTA
CCACAAGTGCAGTTCACACAAGCGCAGGGGGGGCCCCACTTGCAGTTACC
TTCAGCCTCAACAGCCTGAACGTCCATGACAACAACGGGGCTGACAAAGC
TCAAGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCCTTCTTCACA
CACTGGCTCCTGTCAGCGCAATCCCAATTGCCGCAGGGGTCCGACATGTT
GATTGAGCTTAAAACTTAAAACTTAAAACTGGAAATAAAGGGCTCTTTAT
TGTACGAAACTTGCTTTCCTCGTG
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