CB290411

Overview
NameCB290411
Unique NameCB290411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:91..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.223e-34
Identity = 78/99 (78.79%), Postives = 80/99 (80.81%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP VDVS V L VRLEK A YDEIK AIK ESEGKLKG LGY EDDVVS  FVG +RSS FDAKAGIALS KFVKLVSWYD EWGYS+RV DLIV M K
Sbjct:  239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.792e-34
Identity = 76/97 (78.35%), Postives = 80/97 (82.47%), Query Frame = -1
Query:  294 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPM 584
            VP VDVS V L VRLEK+A YD+IKAAIK ESEGKLKG LG+ EDDVVS  FVG SRSS FDAKAGIALSK FVKLVSWYD EWGYS+RV DLI  M
Sbjct:  226 VPTVDVSVVDLTVRLEKEASYDDIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHM 322          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.792e-34
Identity = 77/101 (76.24%), Postives = 80/101 (79.21%), Query Frame = -1
Query:  282 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKTQ 584
            VP VDVS V L VRLEK A Y++IKAAIK ESEGKLKG LGY EDDVVS  FVG SRSS FDAKAGIAL+  FVKLVSWYD EWGYSTRV DLIV M   Q
Sbjct:  237 VPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.448e-34
Identity = 76/99 (76.77%), Postives = 79/99 (79.80%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP VDVS V L VRLEK A YDEIK AIK ES+GKLKG LGY EDDVVS  FVG +RSS FDAKAGIALS  FVKLVSWYD EWGYSTRV DLI+ M K
Sbjct:  239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESQGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.441e-33
Identity = 76/100 (76.00%), Postives = 79/100 (79.00%), Query Frame = -1
Query:  285 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKT 584
            VP  DVS V L VRLEK A YDEIKAAIK ESEGKLKG LGY EDDVVS  F+G +RSS FDAKAGIALS  FVKLVSWYD EWGYS+RV DLIV M  T
Sbjct:  240 VPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 75/101 (74.26%), Postives = 80/101 (79.21%), Query Frame = -1
Query:  282 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKTQ 584
            VP VDVS V L VRLEK A Y +IKAAIK ESEGKLKG LGY EDDVVS  F+G +RSS FDAKAGIAL+   VKLVSWYD EWGYS+RV DLIV M KTQ
Sbjct:  238 VPTVDVSVVGLTVRLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-33
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = -1
Query:  285 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKT 584
            VP VDVS V L VR+EK A Y+++KAAIK ESEGKLKG LGY EDDVVS  FVG +RSS FDAKAGIAL+  F+KLVSWYD EWGYSTRV DLI  + KT
Sbjct:  237 VPTVDVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.476e-33
Identity = 76/99 (76.77%), Postives = 80/99 (80.81%), Query Frame = -1
Query:  288 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWK 584
            VP VDVS V L VRLEK A YDEIKAAIK ESEGKLKG LGY EDDVVS  F+G +RSS FDAKAGIAL+ KFVKLVSWYD E GYSTRV DLIV + K
Sbjct:  238 VPTVDVSVVDLTVRLEKAATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.476e-33
Identity = 73/94 (77.66%), Postives = 78/94 (82.98%), Query Frame = -1
Query:  303 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLI 584
            VP VDVS V L V L K+A YDEIKAAIK ESEGKLKG LGY E+DVVS  FVG SRSS FDAKAGIALSKKFVK+V+WYD EWGYS+RV DLI
Sbjct:  237 VPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLI 330          
BLAST of CB290411 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.151e-33
Identity = 75/101 (74.26%), Postives = 78/101 (77.23%), Query Frame = -1
Query:  282 VPPVDVSGVALPVRLEKDAFYDEIKAAIKGESEGKLKGFLGYPEDDVVSPAFVGASRSSFFDAKAGIALSKKFVKLVSWYDKEWGYSTRVGDLIVPMWKTQ 584
            VP  DVS V L VRLEK A YDEIKAAIK ESEG LKG LGY ED VVS  F+G SRSS FDA+AGIALS  FVKLVSWYD EWGYS+RV DLIV M  TQ
Sbjct:  240 VPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340          
The following BLAST results are available for this feature:
BLAST of CB290411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
G3PC_ARATH2.223e-3478.79Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC3.792e-3478.35Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA3.792e-3476.24Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL8.448e-3476.77Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI1.441e-3376.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC3.210e-3374.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA4.192e-3372.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA5.476e-3376.77Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL5.476e-3377.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY7.151e-3374.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bc11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290411 ID=CB290411; Name=CB290411; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTCTTATAAAAGCAAGTTTCCAATAAACAATTGGT
TTTCTCCCCAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTA
CAAGGGAAAATCTAAGCCCAACCCTGCATGAACAGGGAAGGCTCTGGATA
ATGTCTTGGAAACAATTTTATTTAAACTCAAACCCTCTACATAAAAACAC
AAACACCACATTTAGCACAAAAAAACCCCCCACTTACCACAACTAAGCGG
GTTACATACTCAAGCCCCCCCGAGTAAGTTACTGGGTCTTCCACATGGGG
ACAATCAAATCCCCCACACGAGTACTGTACCCCCACTCCTTGTCATACCA
TGAAACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCAT
CAAAAAAACTTGACCTACTGGCACCAACAAAGGCGGGGGATACCACATCA
TCCTCAGGGTATCCCAAAAAACCCTTTAGTTTCCCCTCTGACTCCCCCTT
GATGGCAGCTTTGATTTCATCATAAAAAGCATCCTTCTCCAGCCTCACTG
GGAGGGCAACCCCTGAAACATCAACAGGGGGTAC
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