CB290423

Overview
NameCB290423
Unique NameCB290423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290423_ssr749 microsatellite CB290423_ssr749:749..760. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9425 contig Csv1_Contig9425:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.973e-76
Identity = 137/169 (81.07%), Postives = 151/169 (89.35%), Query Frame = -1
Query:  203 MFLRVIGRPLMAKVKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFHKTLEAVTKKDPTAV-TSSESQSRLKE 706
            MFLR IGRPL+AKVKQTTGI GLDVVPNAR VLI+LY+KTLKEIQAVP DEGYRKAVESFTRQRL VC+EEEDWE IEKRLGCGQVEELIEEA+DELTLIGKMIEWDPWGVPDDYECEVIENDAP+PKHVP HRPGPLPE+F+KTLE +  +  T +  ++ S  +LKE
Sbjct:    1 MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESFTRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVIENDAPIPKHVPQHRPGPLPEQFYKTLEGLIAESKTEIPAATPSDPQLKE 169          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_DICDI (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum GN=ndufa5 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.443e-19
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = -1
Query:  347 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPWGVPDDYECEVI 667
            +K++TGITGL V PNAR +L  LYN+ LK+++ +PP  GYRK+ E  T+ RL V + E D  +IE ++  GQ+EELI +A+++L ++  + E   W +PD  +  V+
Sbjct:    6 IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETDIVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = -1
Query:  380 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 667
            +K+TTG+ GL V     E L  LY K L  +  +P +  YRK  E  T ++L + + E D +++E+RL  GQ+EE+I +A++EL+L  KMI+W PW
Sbjct:    5 LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPDVKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.230e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  380 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 667
            +K+TTG+ GL V     E L  LY KTL  ++  P    YRK  E  T ++L + + E D +++E  L  G+VEE+I +A+ EL+L  KM++W PW
Sbjct:    5 LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPDVKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_CAEEL (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorhabditis elegans GN=C33A12.1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.230e-13
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = -1
Query:  383 KQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIE---WDP 664
            K+TTGITGL V  +    L  +Y + L+ ++ +P D  YRK  E+  +QRL + Q E D +++E+++G GQ+EE+IE+A+ EL     +++   W+P
Sbjct:   40 KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDIKKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAWEP 136          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_RAT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Rattus norvegicus GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  380 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 667
            VK+TTG+ GL V     E L  LY K L  ++  P    YRK  E  T ++L++ + E D +++E  L  G+VEE+I +A+ EL+L  KM++W PW
Sbjct:    5 VKKTTGLVGLAVCDTPHERLTILYTKILDLLKHFPKHAAYRKYTEQITSEKLELVKLEPDVKKLENLLQGGEVEEVILQAEKELSLARKMLQWKPW 100          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicularis GN=NDUFA5 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  380 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 667
            +K+TTG+ GL V     E L  LY K L  +  +P +  YRK  E  T ++L + + E D +++E +L  GQ+EE+I +A+ EL+L  KM +W PW
Sbjct:    5 LKKTTGLVGLAVCSTPHERLSILYTKILDVLAEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELSLARKMRDWKPW 100          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pongo pygmaeus GN=NDUFA5 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.359e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = -1
Query:  380 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 667
            +K+TTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct:    5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMKEWKLW 100          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pongo abelii GN=NDUFA5 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.359e-12
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = -1
Query:  380 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 667
            V QTTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct:    5 VGQTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMKEWKLW 100          
BLAST of CB290423 vs. ExPASy Swiss-Prot
Match: NDUA5_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pan troglodytes GN=NDUFA5 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.359e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = -1
Query:  380 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 667
            +K+TTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct:    5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 100          
The following BLAST results are available for this feature:
BLAST of CB290423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NDUA5_ARATH2.973e-7681.07Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUA5_DICDI7.443e-1942.99Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUA5_BOVIN3.822e-1541.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA5_MOUSE1.230e-1340.63NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA5_CAEEL1.230e-1338.14Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUA5_RAT2.097e-1340.63NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA5_MACFA2.097e-1339.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA5_PONPY1.359e-1239.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA5_PONAB1.359e-1240.63NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA5_PANTR1.359e-1239.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290423 ID=CB290423; Name=CB290423; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTCTTGAACACCTGTTCATATATTATTAACCCAATGGT
TCAAGCCTTTTGTCTCATAAATCAAAACTCTATGCAATCTAAGGAAACAG
GCAAGATACAAGATAAAGAGCAAGAACAAGAGAAAATATGCAGGCAAAGA
GACAGCTTTGACTATGAAACTCAACATTCTTCCAGACAGGAGCAGCATAC
TACTCCTTCAGCCGTGATTGTGACTCACTAGAGGTGACTGCAGTAGGATC
CTTTTTGGTAACAGCTTCCAGCGTCTTATGGAATTCCTCAGGCAGAGGTC
CAGGTCGATGCAGGGGAACATGCTTGGGAACCGGAGCATCATTCTCAATA
ACTTCACATTCGTAGTCATCAGGAACACCCCAAGGATCCCACTCGATCAT
TTTCCCGATGAGCGTGAGCTCATCCTGAGCCTCCTCGATGAGCTCCTCGA
CCTGGCCACAACCGAGTCGTTTCTCGATCTGTTCCCAGTCCTCTTCCTCT
TGACAGACCTTCAAACGTTGCCGTGTGAAGCTTTCGACGGCCTTGCGGTA
CCCTTCGTCCGGAGGAACGGCTTGGATCTCCTTTAGCGTTTTGTTGTAAA
GATTGATCAGAACTTCCCTCGCGTTGGGGACTACATCCAGTCCCGTGATC
CCAGTCGTTTGTTTCACCTTGGCCATCAATGGCCGTCCGATCACGCGCAG
GAACATCTTCGATTTGATGGTTCGCTTTGATTCAACTTTGATTCTCAGCT
CTCTCTCTCT
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