CB290427

Overview
NameCB290427
Unique NameCB290427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.712e-88
Identity = 174/259 (67.18%), Postives = 193/259 (74.52%), Query Frame = 2
Query:   29 STFWQNKLLQQKQFLV-PVQQRRVHSRKAGAAGVRRGINNPVAALSEDLVKGAASSAV------PGAAEKPVKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            S F   K  Q+ QF + P   R +  R   ++GV       VAA+SEDLVK    S V          EK VKFKVRAV TV+   KEDFKETLV   DA T+KIGRNVVLEL+ T+VDP+T  PKKS+ AVLKDWSKKSN KAERVHYTAEF VDS FG+PGAITV NKHQKEFFLE+ITIEGFACGPVHF CNSWVQS KDH  KRI F NQPYLPSETP+GLR LREKEL+++RG GKG RKLSDRIYDYDVYND+
Sbjct:   26 SRFSIKKKTQRTQFSINPFDPRPM--RAVNSSGV-------VAAISEDLVKTLRISTVGRKQEKEEEEEKSVKFKVRAVATVRNKNKEDFKETLVKHLDAFTDKIGRNVVLELMSTQVDPKTNEPKKSKAAVLKDWSKKSNSKAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPSGLRTLREKELENLRGNGKGERKLSDRIYDYDVYNDI 275          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.148e-85
Identity = 164/252 (65.08%), Postives = 184/252 (73.02%), Query Frame = 2
Query:   47 KLLQQKQFLVPVQQRRVHSRKAGAAGVRRGINNPVAALSEDLVKGAASSAVPGAAEKP------VKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            K  Q  QF +    RR    K+G           VAA+SEDLVK    S   G  +        VKFKVRAV+TV+   KED KETLV   DA  +KIGRN+VLEL+ T++DP+TK PKKS  AVLKDWSKKS  KAERVHYTAEF VD+ FG+PGAITV NKHQKEFFLE+ITIEGFA GPVHF CNSWVQS KDH  KRIFF NQPYLP+ETP+GLR LREKELK++RG G GVRKLSDRIYD+DVYNDL
Sbjct:   28 KRTQSTQFSINPFDRRPRKTKSGV----------VAAISEDLVKTLRFSTTTGDRKSEEEEKAAVKFKVRAVVTVRNKNKEDLKETLVKHLDAFADKIGRNIVLELISTQLDPKTKLPKKSNAAVLKDWSKKSKTKAERVHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKELKNLRGDGSGVRKLSDRIYDFDVYNDL 269          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.501e-67
Identity = 129/221 (58.37%), Postives = 160/221 (72.40%), Query Frame = 2
Query:  149 VAALSEDLVKGAASSAVP----GAAEK---PVKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIE--GFACGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            VAA+SE++ + AAS +      GA E+   P K  +RA LTV++  KED KE +    DAL + +GRNVVLEL+ T++ PRTK P +S    +KDW +K   K + V YTAEF VD++FG PGAI VAN+H +EFFLE+I +E  G  CGPVHF CNSWVQST++   KR+FF+N+PYLPSETP GLR LREKELKD+RG G GVRKLSDRIYDY  YNDL
Sbjct:   45 VAAISEEVPRLAASPSSGIKGGGAGERRPAPEKVALRAALTVRRKQKEDIKEAVAGHLDALWDMVGRNVVLELISTKIHPRTKKPMQSGRVSIKDWCQKRGAKGDHVVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVEGGGLPCGPVHFACNSWVQSTRELPTKRVFFSNKPYLPSETPPGLRELREKELKDLRGDGTGVRKLSDRIYDYATYNDL 265          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.355e-63
Identity = 122/237 (51.48%), Postives = 159/237 (67.09%), Query Frame = 2
Query:  110 AGAAGVRRGINN--------PVAALSEDLVKGAASSAVPGAAEKPV----KFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            AG+ G+ +G +         PV AL E +V   A       A +P         RAV+TV++  KED K+    Q DAL +++GR+V+LELV TE DPR   PKKS+ + L  W  K +VKAERV YTAEF VD+ FG PGA+TV N+HQ+EF++E+I +EGF  GP HF CNSWVQ T+    +R+FF+N+PYLPSETP GLR LR +EL D+RG G G R+++DR+YDYDVYNDL
Sbjct:   15 AGSRGMGKGASRRRTARSTAPVGALVERVVVAPAPVEQQRGAGRPEAHPQSVAARAVVTVRRRRKEDAKDRFAEQLDALADRVGRSVLLELVSTETDPRKGTPKKSKPSALVGWFDKKDVKAERVVYTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVEGFPTGPAHFTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGLRELRLRELADLRGDGTGERRITDRVYDYDVYNDL 251          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.726e-34
Identity = 99/246 (40.24%), Postives = 132/246 (53.66%), Query Frame = 2
Query:   59 QKQFLVPV--QQRRVHSRKAGAAGVRRGINNPVAALSEDLVKGAASSAVPGAAEKPVKFK-VRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAER-VHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            +KQ  VP+  Q R V SR+  A     G  +    L         SS  P    K    K V AV+ ++K IKE   E   +Q +   + IG+ ++++LV  E+DP T   +KS E+ +    K   VK  R + +TA+F V  NFG PGAI V N    E  L  I IE  +   + F  N+W+ S  D+   RI F +QP LPSETP G++ LREK+L  +RG GKG RK  +RIYDYDVYNDL
Sbjct:   28 RKQHRVPISRQVRAVISREEKAVDQEDGKKSTNKPLIN-------SSQFPWQRSKYTGSKTVTAVVKIRKKIKEKLTERFEHQLELFMKAIGQGMLIQLVSEEIDPETGKGRKSLESPVMGLPKA--VKDPRYLVFTADFTVPINFGKPGAILVTNLLSTEICLSEIIIED-STDTILFPANTWIHSKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKPHERIYDYDVYNDL 263          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.400e-30
Identity = 74/201 (36.82%), Postives = 111/201 (55.22%), Query Frame = 2
Query:  212 EKPVKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGT-EVDPRT-KGPKKSREAVLKDWSKK--SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGP-----VHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVR-KLSDRIYDYDVYNDL 784
            +K    K+   + V K    DFK+ + +  D + E +GR V L L+ + + DP   K  +  + A L+ W  K  ++V AE   +   F  D + G P A  + N H  +F+L+++T+ GF  G      +HF CNSW+     +   R+FF+N+ YLPSETP  ++ LRE+ELK++RG  KG   K  DR+YDY  YNDL
Sbjct:   28 KKTTTMKIEGEVVVMKKNLLDFKDVMASLLDRVNELLGRRVSLHLISSHQPDPANEKRGRLGKAAHLEKWVTKIKTSVTAEETAFGVTFDWDESMGPPAAFVIKNHHHSQFYLKSLTLRGFPDGEGGATAIHFICNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEELKNLRGNEKGGEFKEWDRVYDYAYYNDL 228          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.400e-30
Identity = 76/198 (38.38%), Postives = 111/198 (56.06%), Query Frame = 2
Query:  203 GAAEKPVKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKS--REAVLKDW-SKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGF-ACGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            G  E   K     V+ +KKN+  DF +   +  D L E +G  + L LV ++V     G K    + A L+DW +  +++ A    +   F  +++FG PGA  + N H  EF L+++T+E     G VH+ CNSW+   K ++  R+FF+N+ YLP ETPA L   RE+EL  +RGTG+G  K  DR+YDY  YNDL
Sbjct:   12 GGNETTTKKVKGTVVLMKKNVL-DFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSENGSKGKLGKAAHLEDWITTITSLTAGESAFKVTFDYETDFGYPGAFLIRNSHFSEFLLKSLTLEDVPGHGRVHYICNSWIYPAKHYTTDRVFFSNKTYLPHETPATLLKYREEELVSLRGTGEGELKEWDRVYDYAYYNDL 208          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.746e-30
Identity = 77/189 (40.74%), Postives = 104/189 (55.03%), Query Frame = 2
Query:  230 KVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKG--PKKSREAVLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            KV+  + + K    DF +   +  D + E +G+ V  +L+ +       G   K S  A L+++    + + A    +   F  +  FG PGA  + N H  EFFL+++T+E     G VHF CNSWV  +  +   RIFFANQPYLPSETP  LR  RE EL  +RG G G R+  DRIYDYDVYNDL
Sbjct:   18 KVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQSDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDWNEEFGVPGAFVIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSFRYKSDRIFFANQPYLPSETPELLRKYRENELVTLRGDGTGKREAWDRIYDYDVYNDL 206          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 88/219 (40.18%), Postives = 124/219 (56.62%), Query Frame = 2
Query:  152 AALSEDLVKGAASSAVPGAAEKPVKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITI---EGFACGPV-HFQCNSWVQ--STKDHS--GKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            A+ S    +G +SS +  AA      +V+AV T+K  + E     L+N+   + + IGR++ LELV +E+D +T   K +  +   +     +     V Y A+F V S FG  GAI V N+ ++E FLE I +   +G     V   +CNSWVQ  S  D     KRIFFAN+ YLP +TPAGLR+ R+ +L+  RG G G R+  DR+YDYDVYNDL
Sbjct:   63 ASSSATASRGDSSSDMAAAAA----VRVKAVATIKVTVGE-----LINRSIDIRDLIGRSLSLELVSSELDAKTGKEKATVRSYAHNVDDDDH---SVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREADDRVYDYDVYNDL 269          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 79/190 (41.58%), Postives = 110/190 (57.89%), Query Frame = 2
Query:  224 KFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVG-TEVDPRTKGPKKSREAVLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            K K   VL  K  ++ +   + V+  +A    +GR+V L+L+  T+ D   KG K  ++  L+  +     + A    +   F  D + G PGA  + N  Q EFFL+++T+E  +  G + F CNSWV +TK +   RIFFAN  Y+PSETPA L + RE+ELK +RG G G RK  DRIYDYDVYNDL
Sbjct:    7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDTFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDL 192          
The following BLAST results are available for this feature:
BLAST of CB290427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX4_ARATH2.712e-8867.18Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH2.148e-8565.08Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ORYSJ4.501e-6758.37Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX5_ORYSJ1.355e-6351.48Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH1.726e-3440.24Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX5_ARATH4.400e-3036.82Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX1_ARATH4.400e-3038.38Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOXA_SOLLC5.746e-3040.74Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOXC1_ORYSJ2.852e-2940.18Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX1_SOYBN2.852e-2941.58Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290427 ID=CB290427; Name=CB290427; organism=Citrus sinensis; type=EST; length=786bp
GCACGTGGCAAAAGTGCTTTTAAACCAAAGTACTTTTTGGCAAAACAAGC
TGCTGCAACAAAAGCAGTTTTTGGTACCCGTGCAACAGAGAAGAGTGCAT
TCGAGGAAAGCAGGAGCAGCAGGTGTGAGGAGGGGGATTAATAATCCTGT
GGCTGCTCTAAGTGAAGATTTGGTAAAAGGAGCTGCTTCCTCTGCCGTGC
CCGGGGCTGCTGAAAAGCCAGTGAAGTTTAAGGTGAGGGCTGTGCTGACG
GTGAAGAAGAACATCAAAGAAGATTTCAAAGAGACCCTTGTTAATCAGTT
TGATGCTTTAACTGAAAAGATTGGCAGAAATGTCGTTCTGGAACTTGTCG
GCACTGAAGTTGATCCCAGAACAAAGGGACCAAAGAAAAGCAGAGAAGCA
GTTCTGAAGGATTGGTCAAAGAAATCAAATGTTAAGGCTGAACGGGTCCA
TTACACGGCTGAATTTTTAGTGGACTCAAATTTTGGGACGCCTGGTGCAA
TCACAGTTGCCAATAAGCACCAAAAGGAATTCTTTTTGGAAACTATTACC
ATTGAAGGTTTTGCTTGTGGCCCTGTTCATTTCCAATGCAATTCTTGGGT
TCAATCCACAAAAGATCATTCTGGAAAAAGGATATTCTTCGCTAATCAGC
CATATTTACCGAGTGAGACGCCAGCTGGGCTTAGAGCACTAAGGGAGAAA
GAGCTCAAAGACATTAGAGGCACAGGCAAAGGAGTTAGAAAATTATCGGA
CAGAATTTATGACTATGATGTGTACAATGATCTGGG
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