CB290456

Overview
NameCB290456
Unique NameCB290456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11493 contig Csv1_Contig11493:466..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 4.080e-101
Identity = 174/189 (92.06%), Postives = 183/189 (96.83%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVV+SFDPKPI+GDWNGAGAH NYSTKSMRNDGG ++IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 5.329e-101
Identity = 174/189 (92.06%), Postives = 182/189 (96.30%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVVLSFDPKPIKGDWNGAGAH NYSTK+MRNDGG +VIK AIEKLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  168 GRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.645e-100
Identity = 173/189 (91.53%), Postives = 182/189 (96.30%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACLYAGINISGINGEVMPGQWE+QVGP VGIS+GD+LW++RYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTKSMRNDGG +VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  168 GRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 363.614 bits (932), Expect = 7.695e-100
Identity = 171/189 (90.48%), Postives = 182/189 (96.30%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACLYAG+NISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITEIAGVVLSFDPKPIKGDWNGAGAH NYSTK+MR DGG +VIKKAI+KLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  168 GRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.313e-99
Identity = 171/189 (90.48%), Postives = 181/189 (95.77%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERITE+AGVVLSFDPKPIKGDWNGAGAH NYSTKSMR DGG +VI KAIEKLGK+H EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRP+SNMDPYVVTSMIA+TTILWKP
Sbjct:  168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.313e-99
Identity = 171/189 (90.48%), Postives = 181/189 (95.77%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W ARYILERITEIAGVVLS DPKPI+GDWNGAGAH NYSTKSMRN+GG ++IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  168 GRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.714e-99
Identity = 170/189 (89.95%), Postives = 181/189 (95.77%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITE+AGVVLSFDPKPIKGDWNGAGAH NYSTK+MRNDGG + IK AI+KLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  168 GRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 4.988e-99
Identity = 171/189 (90.48%), Postives = 180/189 (95.24%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV+SHYKAC+YAGINISGINGEVMPGQWEFQVGP +GIS+ D+LW+ARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTKSMRNDGG +VIKKAI KL KRH EHIAAYGEGNERRLTGRHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  168 GRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGPSIGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIAKLEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 8.508e-99
Identity = 171/189 (90.48%), Postives = 180/189 (95.24%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+ D+LW+ARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTKSMRNDGG +VIKKAI KL KRH EHIAAYGEGNERRLTG+HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  168 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CB290456 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.451e-98
Identity = 167/189 (88.36%), Postives = 180/189 (95.24%), Query Frame = -1 
Query:  276 GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 842
            GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG ++IKKAIEKLG RH EHIAAYGEGNERRLTG+HET DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  168 GRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
The following BLAST results are available for this feature:
BLAST of CB290456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_VITVI4.080e-10192.06Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA_VIGAC5.329e-10192.06Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_VITVI2.645e-10091.53Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA7.695e-10090.48Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA1_MEDSA1.313e-9990.48Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA1_ALNGL1.313e-9990.48Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_PHAVU1.714e-9989.95Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA2_SOYBN4.988e-9990.48Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA3_PHAVU8.508e-9990.48Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA3_MEDSA1.451e-9888.36Glutamine synthetase nodule isozyme OS=Medicago sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290456 ID=CB290456; Name=CB290456; organism=Citrus sinensis; type=EST; length=842bp
TTTTTTTTTTTTTTTTGCTAAAATCTTCTTTACTTTTTAAACAGAAGCGA
AGTAGTTTTAAACTATAATATAGTAATCACAACTGAGCATCCCAAACAAT
GAAGTACAAGAGAAACAGAGTACAGTTTTGAATGGCAAGGAACAAATTCA
AACAACAGACTTAAATGCATAGACAAATTATAAAAACATAAGAATTATTT
TTGTGGTGGGTTCAATTTAAGCTTTCATTTTCCCTCGATTTCTTCTTCGT
CATCCATGCTCAAGTTTGTTTTCTAAGGCTTCCAGAGAATGGTGGTTTCA
GCGATCATTGAAGTCACAACATATGGGTCCATGTTTGAAGCTGGCCTTCT
GTCTTCAAAGTATCCCTTTCCTTCTTTCTCAGTGTCACGACCAACGCGAA
TGGAGGCACCTCTGTTAGCGACACCCCAAGAGAAAGTGTTGATATCTGCA
GTTTCATGTCGACCTGTCAGTCTTCTTTCGTTGCCCTCTCCATAAGCAGC
AATGTGTTCCCCGTGGCGTTTCCCCAACTTTTCAATTGCCTTCTTGATCA
CATCAATTCCACCATCATTCCTCATAGACTTGGTGCTGTAGTTGGCGTGT
GCACCAGCACCATTCCAGTCACCCTTGATTGGTTTTGGATCAAATGAAAG
AACAACTCCGGCAATTTCAGTAATCCTCTCGAGTATGTACCGAGCCATCC
ATAACTGATCACCAGAAGAGATACCCACACAGGGACCCACTTGGAATTCC
CACTGACCCGGCATAACTTCACCGTTAATGCCACTGATGTTAATTCCAGC
GTAAAGGCAAGCTTTGTAGTGAGAATTCACAATGTCTCGGCC
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