CB290457

Overview
NameCB290457
Unique NameCB290457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10793 contig Csv1_Contig10793:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.592e-95
Identity = 159/201 (79.10%), Postives = 174/201 (86.57%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWM 722
            TEK+IAEY+WIGGSG+DLRSKARTLP P +DP+KLPKWNYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR NAAK+F HPDVVAEEPWYGIEQEYTLLQKD+NWPL                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWV 216          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.089e-93
Identity = 158/201 (78.61%), Postives = 172/201 (85.57%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWM 722
            TEK+IAEY+WIGGSG+DLRSKARTLP P TDP++LPKWNYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F HPDVVAE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W+
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWV 216          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.059e-93
Identity = 154/200 (77.00%), Postives = 171/200 (85.50%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLW 719
            TEK+IAEY+W+GGSGMDLRSKARTLP P  DP KLPKWNYDGSST+QAPGDDSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR++AAK+F HPDVVAE PWYGIEQEYTLLQKD+NWPL                   ADKA GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGIS+GD++W
Sbjct:   16 TEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVW 215          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.219e-93
Identity = 156/201 (77.61%), Postives = 171/201 (85.07%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWM 722
            TEK+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAK+F  P+V AEEPWYGIEQEYTLLQKD NWPL                   A+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISSGDQ+W+
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWV 216          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.054e-92
Identity = 153/200 (76.50%), Postives = 170/200 (85.00%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLW 719
            TEK+IAEY+W+GGSG+D+RSKARTLP P +DP KLPKWNYDGSSTNQAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV++HYKACL+AGINISGINGEVMPGQWEFQVGP VGIS+GD++W
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIW 215          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.054e-92
Identity = 156/201 (77.61%), Postives = 170/201 (84.58%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWM 722
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR+NAAK+F  P+V AEEPWYGIEQEYTLLQKD NWPL                   A+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISSGDQ+W+
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWV 216          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.682e-92
Identity = 156/201 (77.61%), Postives = 170/201 (84.58%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWM 722
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR+GNNILVMCD YTPAGEPIPTNKR NAAK+F  P+V +EEPWYGIEQEYTLLQKDINWPL                   ADK+ GRDIV+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GDQ+W+
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWV 216          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.976e-92
Identity = 158/201 (78.61%), Postives = 170/201 (84.58%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWM 722
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F +PDVVAEEPWYGIEQEYTLLQ+DINWPL                   ADKA GRDIV+SHYKA LYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W+
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRDIVDSHYKAYLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWV 216          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.805e-92
Identity = 152/200 (76.00%), Postives = 170/200 (85.00%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLW 719
            TEK+IAEY+W+GGSG+D+RSKARTLP P +DP KLPKWNYDGSST+QAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA GRDIV++HYKACL+AGINISGINGEVMPGQWEFQVGP VGIS+GD++W
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIW 215          
BLAST of CB290457 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.019e-91
Identity = 153/200 (76.50%), Postives = 168/200 (84.00%), Query Frame = 3
Query:  120 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLW 719
            +EK+IAEY+W+GGSGMDLRSKARTLP P +DP KLPKWNYDGSSTNQAPG DSEVILYPQ +FKDPFR+GNNILV+CD YTPAGEP+PTNKR NAAK+F HPDV AE PWYGIEQEYTLLQKD NWPL                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W
Sbjct:   16 SEKIIAEYIWVGGSGMDLRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIW 215          
The following BLAST results are available for this feature:
BLAST of CB290457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_VIGAC2.592e-9579.10Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MEDSA1.089e-9378.61Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA2_PHAVU7.059e-9377.00Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA4_MAIZE9.219e-9377.61Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA3_PEA2.054e-9276.50Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA3_MAIZE2.054e-9277.61Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLN11_ORYSJ2.682e-9277.61Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA_NICPL5.976e-9278.61Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA4_PEA7.805e-9276.00Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA3_MEDSA1.019e-9176.50Glutamine synthetase nodule isozyme OS=Medicago sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290457 ID=CB290457; Name=CB290457; organism=Citrus sinensis; type=EST; length=723bp
GGACTAGTTCTCTCATTTTTTATTTTCATTTTCGTTTTCGTTTCAAAACA
AACAAAGCTGCAAGCTAGGCAGCCATGTCTCTTCTCAACGATCTCCTCAA
CCTTAATCTCTCTGAATCCACCGAAAAAGTCATCGCCGAATACGTATGGA
TAGGCGGATCTGGTATGGATTTGAGAAGCAAAGCCAGAACTTTGCCAGCT
CCAACAACGGACCCTACCAAGCTACCGAAATGGAATTACGATGGCTCCAG
CACTAACCAAGCCCCTGGTGATGACAGTGAAGTTATTTTGTACCCGCAAA
CGGTGTTTAAGGATCCTTTCAGAAGAGGGAACAATATCCTGGTAATGTGC
GATGCGTACACTCCAGCCGGCGAGCCCATCCCAACAAACAAAAGATTCAA
TGCCGCCAAAGTTTTCGGCCACCCCGATGTTGTCGCCGAAGAGCCATGGT
ATGGCATTGAGCAGGAGTACACTCTTCTTCAAAAAGACATAAACTGGCCC
TTGGGGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTG
CGGTGTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGTGAATTCTCACT
ACAAAGCTTGCCTTTACGCTGGAATTAACATCAGTGGCATTAACGGTGAA
GTTATGCCGGGTCAGTGGGAATTCCAAGTGGGTCCCTGTGTGGGTATCTC
TTCTGGTGATCAGTTATGGATGG
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