CB290464

Overview
NameCB290464
Unique NameCB290464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:264..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290464 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.540e-44
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = -2
Query:  182 MARSLFKGKLLLAPVADGILLSIGRRGYAAAAPLGTISRSGIMEKNDLPPAVREDSGASSEWAPDPITGYYSPENRAVEIDPAELREMLLNHKVRAH 472
            MARSLFK KLLLAPVADGI LSI RRGYAAAAPLGTISR+GIMEKNDL PAVREDSGASS WAPDPITGYY PENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CB290464 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 54/104 (51.92%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  185 MARSLFKGKLLLAPVADGILLSIGRRGYAAAAPLG---TISRSGIMEKNDLPPAVREDSGA-----SSEWAPDPITGYYSPENRAVEIDPAELREMLLNHKVRA 472
            MARS+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SS WAPDP+TGYY PEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CB290464 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.223e-18
Identity = 51/104 (49.04%), Postives = 65/104 (62.50%), Query Frame = -2
Query:  185 MARSLFKGKLLLAPVADGILLSIGRRGYAAAAPLG---TISRSGIMEKNDLPPAVREDSGA-----SSEWAPDPITGYYSPENRAVEIDPAELREMLLNHKVRA 472
            MARS+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SS WAPDP+TGYY PEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CB290464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.540e-4492.78Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI5.892e-2051.92Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI4.223e-1849.04Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290464 ID=CB290464; Name=CB290464; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTGAGAAAAATCATGGAAATGCACTACCATTAAAGGT
AAATAACAGNTGATATCAAAACAACAGCAACCCCTTTAGAGTGAGTCAAA
ATTGCTACTGGAACAACATCACTTAAAAGTTAAAGCACCGCTAACAGCAA
AGGATCCGCTGCTATGCGCGACCACTCCCTAGTGTGCCCTGACTTTGTGG
TTCAACAGCATCTCTCGAAGCTCTGCTGGATCAATCTCGACCGCCCGATT
CTCCGGGCTGTAATACCCAGTGATGGGATCTGGGGCCCACTCAGAAGAGG
CTCCAGAATCCTCTCTCACCGCAGGCGGCAAATCATTTTTCTCCATGATA
CCACTCCGAGATATGGTTCCCAAGGGTGCTGCTGCAGCATATCCTCTCCT
GCCAATGGAGAGCAAAATGCCATCAGCAACAGGAGCAAGAAGAAGCTTAC
CTTTGAAGAGAGAGCGGGCCATTGTTTTATTTACTTATAGAACTTAATAT
ATATGAAGATAGCTACCTGGGATGTTTCTGTACAGTGCTACTACAGAAAA
AGAAAGATTCTGCTCCTGCAGTAGCTATAAGCAAAAGCTAGCGGTTCGCT
CTCTCCTCGTG
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