CB290478

Overview
NameCB290478
Unique NameCB290478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290478 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 47/93 (50.54%), Postives = 54/93 (58.06%), Query Frame = -2 
Query:  198 LEEVFQTAKGRVPFFLKGGVFWGTKFFKALVLGAXXXXXXXXXXXFLAINGEGGGKKMLQMFCEEFELTKPLRGGRSLKGISPTPLGTHWAPP 476
            LEEV + A+GR+P FL GGV  GT  FKAL LGA            LA  GE G KK+LQM  +EFELT  L G RSLK IS + +   W  P
Sbjct:  269 LEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
[Close]
BLAST of CB290478 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 47/98 (47.96%), Postives = 55/98 (56.12%), Query Frame = -2 
Query:  183 LEEVFQTAKGRVPFFLKGGVFWGTKFFKALVLGAXXXXXXXXXXXFLAINGEGGGKKMLQMFCEEFELTKPLRGGRSLKGISPTPLGTHWAPPGGVPK 476
            LEEV +  +GRVP FL GGV  GT  FKAL LGA            LA  GE G KK+LQM  +EFELT  L G RSL  I+   + T W  P  +P+
Sbjct:  269 LEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPR 366
[Close]
BLAST of CB290478 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15
Identity = 46/93 (49.46%), Postives = 53/93 (56.99%), Query Frame = -2 
Query:  198 LEEVFQTAKGRVPFFLKGGVFWGTKFFKALVLGAXXXXXXXXXXXFLAINGEGGGKKMLQMFCEEFELTKPLRGGRSLKGISPTPLGTHWAPP 476
            LEEV +  +GR+P FL GGV  GT  FKAL LGA            LA  GE G +K+LQM  +EFELT  L G RSLK IS   + T W  P
Sbjct:  269 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTP 361
The following BLAST results are available for this feature:
BLAST of CB290478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GOX_SPIOL1.105e-1550.54Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX1_ARATH1.886e-1547.96Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX2_ARATH2.463e-1549.46Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290478 ID=CB290478; Name=CB290478; organism=Citrus sinensis; type=EST; length=477bp
TTTTTTTTTTTTTTTTTACAAAAAAAGCCCCAAGCCAACCCCCCCCTCCC
TTTATTTAATTAATTCCTACCTCCTTGGCGTTTTAAAAAAAGGGTAATCC
CTGAATCCGGGATTAGGTTATTCAAATCCCCGTTGTTTAAAAAAGAAAAG
TTTTAATGGTGATGTTGGAAACCCTTTTAAAATTTGGGTACACCCCCGGG
AGGGGCCCAATGAGTCCCAAGGGGGGTGGGGGAAATCCCCTTGAGGGAAC
GGCCCCCCCTTAATGGCTTTGTTAACTCAAACTCCTCACAAAACATTTGA
AGCATTTTTTTCCCACCCCCCTCTCCATTAATTGCCAAGAAAAATGGGAC
TGGCCTTCCAAAAAAAACTCCAAATGCTCCTAAAACCAAAGCCTTGAAAA
ATTTGGTTCCCCAAAAAACCCCCCCTTTAAGGAAAAAAGGAACTCGGCCT
TTTGCAGTTTGAAAAACCTCTTCCAAA
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